View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4512_low_56 (Length: 213)
Name: NF4512_low_56
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 700432 - 700630
Alignment:
| Q |
1 |
tggccttgaagcatttgaagaagaaac-agaatttagggccaagtacggtgtaaaggatgaatgggtgatgccgtttgatattgtgcctattattgaagt |
99 |
Q |
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| T |
700432 |
tggccttgaagcatttgaagaagaaaccagaatttagggccaagtacggtgtaaaggatgaatgggtgatgccgtttgatattgtgcctattattgaagt |
700531 |
T |
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| Q |
100 |
tccagagtttggaaataagtgtgcagagacagtttgtttgcaaatgaaaatcgaaagtccgaatgagagagttaagcttacagacgccaaggatataac |
198 |
Q |
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| T |
700532 |
tccagagtttggaaataagtgtgcagagacagtttgtttgcaaatgaaaatcgaaagtccgaatgagagagttaagcttgcagacgcgaaggatataac |
700630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 32 - 190
Target Start/End: Complemental strand, 23261659 - 23261501
Alignment:
| Q |
32 |
tttagggccaagtacggtgtaaaggatgaatgggtgatgccgtttgatattgtgcctattattgaagttccagagtttggaaataagtgtgcagagacag |
131 |
Q |
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| T |
23261659 |
tttagggcgaagtttggtgtcaaggatgaatgggtgttgccgtttgaggttttgccgatcattgaagttccgccatttggaaacaagtgcgcagagacag |
23261560 |
T |
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| Q |
132 |
tttgtttgcaaatgaaaatcgaaagtccgaatgagagagttaagcttacagacgccaag |
190 |
Q |
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| T |
23261559 |
tttgcctgcagatgaaaatcaaatctcagaatgagaaagacaagcttgcagaagccaag |
23261501 |
T |
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