View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4512_low_57 (Length: 209)
Name: NF4512_low_57
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 7687680 - 7687872
Alignment:
| Q |
1 |
ctacaactcatagtattattagaattgtgcatgtttttatttccgttcatatttgcagctctatgtctcctcatgtggccacctaaagcttgtcctattg |
100 |
Q |
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| T |
7687680 |
ctacaactcatagtattattagaattgtgcatgtttttatttccgttcatatttgcagctctatgtctcctcatgtggccacctaaagcttgtcctattg |
7687779 |
T |
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| Q |
101 |
caaactccaatccacaaatagaacactcatgtgttttaggctttgggggtgtatgtagcaattgaccatcaatattttctcccatcaaccttg |
193 |
Q |
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| T |
7687780 |
caaactccaatccacaaatagaacactcatgtgttttaggctttgggggtgtatgtagcaattgaccatcaatattttctcccatcaaccttg |
7687872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 32504493 - 32504352
Alignment:
| Q |
1 |
ctacaactcatagtattattagaattgtgcatgtttttatttccgttcatatttgcagctctatgtctcctcatgtggccacctaaagcttgtcctattg |
100 |
Q |
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| T |
32504493 |
ctacaactcatagtattattaaaattgttcatatt---attttcgtttatatttgaagctctatatcttctcatgtagccgcttaaagcttgtcctattg |
32504397 |
T |
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| Q |
101 |
caaactccaatccacaaatagaacactcatgtgttttaggctttg |
145 |
Q |
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| T |
32504396 |
caaactccaatccacaaatagaacattcaagtgttttaggctttg |
32504352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 52052864 - 52052789
Alignment:
| Q |
64 |
tgtctcctcatgtggccacctaaagcttgtcctattgcaaactccaatccacaaatagaacactcatgtgttttag |
139 |
Q |
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| T |
52052864 |
tgtcttctcatgtgaccacccaaagcttgtcctattccaaattctaatccacaaatagaacatgcatgcgttttag |
52052789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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