View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4512_low_6 (Length: 509)
Name: NF4512_low_6
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 22 - 503
Target Start/End: Complemental strand, 33968247 - 33967746
Alignment:
| Q |
22 |
atatcaactcatgtcatcttttttgaaagcgatgttacccttggttacgattcaatcgtgatcaagcattagggagttagatatattc------------ |
109 |
Q |
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| T |
33968247 |
atatcaactcatgtcatcttttttgacagcgatgttatccttggtcacgattcaatcgtgatcaagcattagagagttagatatattcttgatttgggag |
33968148 |
T |
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| Q |
110 |
--------cgtttttataatattaaatgttaaatcacgcttctcaaacttttttctcctcgcttccaagaacattttttggaatacctttgaggttgaac |
201 |
Q |
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| T |
33968147 |
atatattccgtttttataatattaaaagttaaaccacgcttctcaaacttttttctcctcgcttccaagaacattttttggaatacctttgaggttgaaa |
33968048 |
T |
|
| Q |
202 |
aaggattctgtgaagcattttaaaagaaaacatatgcgctatcacttgcaaactatcaagagataaagagatttgttatattaattaagttctgccgtga |
301 |
Q |
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| T |
33968047 |
aaggattctgtgaagcattttaaaagaaaacatatgcgctatcacttgcaaactatcaacagataaagagatttgctaaattaattaagttctgccgtgt |
33967948 |
T |
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| Q |
302 |
ttaggattgaaaaaatgcaatatctaaataacattaccggccgaaatcaagggctgttgacaataagatctctgaatcgatattactttgccctgacatg |
401 |
Q |
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| T |
33967947 |
ttaggattgaaaaaatgcaatatctaaataacattaccggccgaaatcaagggctgttgacagtaagatctctgaatcgatattactttgccctgacatg |
33967848 |
T |
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| Q |
402 |
tgcaatttagaaattaaatcagaattgcatacaaaattttgtaagtaaattgaatgaatggagcaaaaattaatgatcgaaaacaactgctagtataatc |
501 |
Q |
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| T |
33967847 |
tgcaatttagaaattaaatcagaattgcatacaaaattttgtaagtaaattgaatgaatggagcaaaaattaatgattgaaaacaactgctagtataatc |
33967748 |
T |
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| Q |
502 |
ta |
503 |
Q |
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| T |
33967747 |
ta |
33967746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 395 - 489
Target Start/End: Original strand, 33431749 - 33431843
Alignment:
| Q |
395 |
tgacatgtgcaatttagaaattaaatcagaat-tgcatacaaaattttgtaagtaaattgaatgaatggagcaaaaattaatgatcgaaaacaact |
489 |
Q |
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|||||| ||||||||||||||||||||||||| | ||||| ||| ||||||||||||||||| ||| |||| ||||||||||| |||||||||| |
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| T |
33431749 |
tgacatatgcaatttagaaattaaatcagaatatccatac-aaagtttgtaagtaaattgaaagaacatagcataaattaatgattgaaaacaact |
33431843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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