View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4512_low_7 (Length: 463)
Name: NF4512_low_7
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 227 - 454
Target Start/End: Complemental strand, 9111497 - 9111268
Alignment:
| Q |
227 |
aatatattattatgacttttaaatatttgaatgaacgaatgttaagatatttattttgatattgagtttcttaacgtttgttctcaattctacaccctcc |
326 |
Q |
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| T |
9111497 |
aatatattattatgtcttttaaatatttgaatgaacgaatgttaagatatttattttgatattgagtttcttaacgtttgtcctcaattctacaccctcc |
9111398 |
T |
|
| Q |
327 |
atcaagaccttcatcctgcaaacttcatcgtgaccttcatcatgcgacctata--tccctccattttgtccctcatcttctgcgattttatcaactacga |
424 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||| ||||||| ||||||||||||| ||||||||||| |
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| T |
9111397 |
atcaagaccttcatcctgcaaacctcatcgtgactttcatcatgcgacctatatctccctccatttcgtccctcgtcttctgcgatttcatcaactacga |
9111298 |
T |
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| Q |
425 |
cgtgtagactacatcttcaacctttcatct |
454 |
Q |
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| T |
9111297 |
catgtagactacatcttcaacctttcatct |
9111268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 9111836 - 9111623
Alignment:
| Q |
19 |
atgccgacgttgtatcatatatgccgacatcttttttaagttggtcaaaatatatatgttcttctttcattcaaaatgaggatattgtaagtttaatttt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9111836 |
atgccgacgttgtatcatatatgccgacatcttttttatgttggtcaaaatatatatgttcttctttcattcaaaatgaggatattgtaagtttaatttt |
9111737 |
T |
|
| Q |
119 |
tgcatcaaaaacaagtttaatttttatataa--nnnnnnnnnagatattttctaatttgtgttttaaaggctcgtgttaaaattttaataatagaaattt |
216 |
Q |
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| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9111736 |
tacatcaaaaacaagtttaatttttatataatttttttttttagatattttctaatttgtgttttaaaggctcgtgttaaaaatttaataatagaaattt |
9111637 |
T |
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| Q |
217 |
tgcattgacaaata |
230 |
Q |
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|||||||||||||| |
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| T |
9111636 |
tgcattgacaaata |
9111623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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