View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4512_low_9 (Length: 454)
Name: NF4512_low_9
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 38 - 447
Target Start/End: Complemental strand, 8975744 - 8975340
Alignment:
| Q |
38 |
aactccactcatagtttttgcctatagctagtgtgcaaaactatatttcagcaagaattgaattcctgatttttgcgctcactacaaaaaa-tgaacatt |
136 |
Q |
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| T |
8975744 |
aactccactcatagtttttgccta------gtgtgcaaaactatattttagcaagaattgaattcctgatttttgcgctcactacaaaaaaatgaacatt |
8975651 |
T |
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| Q |
137 |
aacaaagagaatatgcaggaaaaggcttgtacaacaagatatcccaacaaagtaccaataatggaatttgtgcagacaagggaaggaaggaaggaacatg |
236 |
Q |
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| T |
8975650 |
aacaaagagaatatgcaggaaaaggctggtacaacaagatatcccagcaaagtaccaagaatggaatttgtgcagacaagggatggaaggaaggaacatg |
8975551 |
T |
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| Q |
237 |
ggaaatttgcagataaccctattatttttgtactttttaactcagaagttaaggaaaatctacccttaattgcacttgtaagcttaggtcgtaacaaaat |
336 |
Q |
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| T |
8975550 |
ggaaatttgcagataaccctattatttttgtactttttaactcagaagttaaggaaaatctacccttaattgcacttgtaagcttaggtcgtaacaaaat |
8975451 |
T |
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| Q |
337 |
ttctattaaaagttacttcataaattaaatagttataattgttaccaatatttttataacatttcaaatgttaaacaaaaataaaaagcatgtcaagttt |
436 |
Q |
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| T |
8975450 |
ttctattaaaagttacttcataaattaaatagttataattgttaccaatatttttataacatttcaaatgttaaacaaaaataaaaagcatgtcaagttt |
8975351 |
T |
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| Q |
437 |
aagtgatgatg |
447 |
Q |
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| T |
8975350 |
aagtgatgatg |
8975340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 403
Target Start/End: Complemental strand, 8963952 - 8963879
Alignment:
| Q |
330 |
acaaaatttctattaaaagttacttcataaattaaatagttataattgttaccaatatttttataacatttcaa |
403 |
Q |
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| T |
8963952 |
acaacatttctattaaaagttactgtctagattaaatagttataaaggttacctatatttttataaaatttcaa |
8963879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 379
Target Start/End: Original strand, 17009116 - 17009165
Alignment:
| Q |
330 |
acaaaatttctattaaaagttacttcataaattaaatagttataattgtt |
379 |
Q |
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|||| ||||||||||||||||||| || | ||||||||||||||| |||| |
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| T |
17009116 |
acaacatttctattaaaagttactgcaaagattaaatagttataaatgtt |
17009165 |
T |
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