View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513-Insertion-3 (Length: 780)
Name: NF4513-Insertion-3
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513-Insertion-3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 685; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 7 - 780
Target Start/End: Complemental strand, 42192468 - 42191686
Alignment:
| Q |
7 |
aaaaagaaaatacaataggcaccgaaaaagacatggatgcctataacccaaaacnnnnnnnccatcccaaaaagtgaggccgacttatacatgcggacag |
106 |
Q |
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| T |
42192468 |
aaaaagaaaatacaataggcaccgaaaaagacatggatgcctataacccaaaacaaaaaaaccatcccaaaaagtgaggccgacttatacatgcggacag |
42192369 |
T |
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| Q |
107 |
gccaaacaagcactgacaacccaatcatacccctgcctcactaagaatcacaaccctgcacgcctagctgccgaaggcagcaaagaatgaaaccaaggta |
206 |
Q |
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| T |
42192368 |
gccaaacaagcactgacaacccaatcatacccctgcctcactaagaatcacaaccctgcacgcctagctgccgaaggcagcaaagaatgaaaccaaggta |
42192269 |
T |
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| Q |
207 |
gcagcacctccacccc-tttgaccgaaaatcacagcagccaaaacacagtacacagagaagccaaaaccgaaaatgtctaacagcctaaggtcttccaat |
305 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42192268 |
gcagcacctccaccccctttgaccgaaaatcacagcagccaaaacacagtacacagagaagccaaaaccgaaaatgtctaacagcctaaggtcttccaat |
42192169 |
T |
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| Q |
306 |
taaaagcacacatccaatagaaaagaaatggaaaaggcctgaacctgcctaacaccaccagcagaagaaaaaattaagtgtatctgatttctttctattg |
405 |
Q |
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| T |
42192168 |
taaaagcacacatccaatagaaaagaaatggaaaaggcctgaacctgcctaacaccaccagcagaagaaaaaattaagtgtatctgatttctttctattg |
42192069 |
T |
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| Q |
406 |
ttgacaggtcacaccaacaatattttgatttctctttgtaaataactcatcgtcatcaactttgagagatttttctcctcaatacataagtcgaactttg |
505 |
Q |
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| T |
42192068 |
ttgacaggtcacaccaacaatattttgatttctctttgtaaataactcatcgtcatcaactttgagagatttttctcctccatacataagtcgaactttg |
42191969 |
T |
|
| Q |
506 |
gtcaaactatgtaaacaaatatcattgtgcatcctttcttctcatcaatcttgttttattgttggtgtttgtttaatcacttccgttttggttgatgcta |
605 |
Q |
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| T |
42191968 |
gtcaaactatgtaaacaaatatcattgtgcatcccttcttctcatctatcttgttttattgttggtgtttgtttaatcacttcggttttggttgatgcta |
42191869 |
T |
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| Q |
606 |
atttttc--------tcaaagcattggtgggatttttgtctgagttcacaataattggcgtccaccgtagggcaattagaacaaatcattatgcaagcac |
697 |
Q |
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| T |
42191868 |
atttttctcaacacgtcaaagtattggtgggatttttgtccgagttcacaataattggcgtccactgtaaggcaattagaacaaatcattatgcaagcac |
42191769 |
T |
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| Q |
698 |
catgagtaccaagtggaatatcgagaaattcatcgaggcaacacttttaggttgtgagaggtgaaaaagcaagtagtcttgat |
780 |
Q |
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| T |
42191768 |
catgagtaccaagtggattatcgagaaattcatcgaggcaacacttttaggttgtgagaggtgaaaaagcaggtagtcttgat |
42191686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 553 - 610
Target Start/End: Complemental strand, 2329220 - 2329163
Alignment:
| Q |
553 |
atcttgttttattgttggtgtttgtttaatcacttccgttttggttgatgctaatttt |
610 |
Q |
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| T |
2329220 |
atcttattttattgtttgtgcttgtttaatcactttggttttggttgttgctaatttt |
2329163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 541 - 729
Target Start/End: Complemental strand, 35893391 - 35893196
Alignment:
| Q |
541 |
ttcttctcatcaatcttgttttattgttggtgtttgtttaatcacttccgttttggttgatgctaatttttc--------tcaaagcattggtgggattt |
632 |
Q |
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| T |
35893391 |
ttcttctcatttatcatgttttattgtttgtgcttgtttaatcactttggttttggttgctgctaattttgctcaatgcatcaaagtattggtgtgagtt |
35893292 |
T |
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| Q |
633 |
ttgtctgagttcacaataattggcgtccaccgtagggcaattagaacaaatcattatgcaagcaccatgagtaccaagtggaatatcgagaaattca |
729 |
Q |
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| T |
35893291 |
ttgtttgaattcagaacaattggcgtcgactatgggccaatcagaacaaatcattaagtgagcatcatgggtaccaag-gggatatcaagaaattca |
35893196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 642 - 732
Target Start/End: Original strand, 16602013 - 16602103
Alignment:
| Q |
642 |
ttcacaataattggcgtccaccgtagggcaattagaacaaatcattatgcaagcaccatgagtaccaagtggaatatcgagaaattcatcg |
732 |
Q |
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| T |
16602013 |
ttcacaacaattggggtccaccgtggggaaatcataacaaatcattaagagagaattatgggtaccaagtgggatatcgaaaaattcatcg |
16602103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 642 - 732
Target Start/End: Original strand, 7946137 - 7946227
Alignment:
| Q |
642 |
ttcacaataattggcgtccaccgtagggcaattagaacaaatcattatgcaagcaccatgagtaccaagtggaatatcgagaaattcatcg |
732 |
Q |
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| T |
7946137 |
ttcacaacaattgacgcctactgtggggcaataacaacaaatcattaaacgagcaccatggttaccaagtggaatatcgaaaaattcatcg |
7946227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 677 - 733
Target Start/End: Original strand, 31116155 - 31116211
Alignment:
| Q |
677 |
aacaaatcattatgcaagcaccatgagtaccaagtggaatatcgagaaattcatcga |
733 |
Q |
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| T |
31116155 |
aacaaatcattattgaagcatcatgggtaccaagtgggatatcgaaaaattcatcga |
31116211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 643 - 688
Target Start/End: Complemental strand, 9103245 - 9103200
Alignment:
| Q |
643 |
tcacaataattggcgtccaccgtagggcaattagaacaaatcatta |
688 |
Q |
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|||||| ||||||||||||||| ||| |||| |||||||||||||| |
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| T |
9103245 |
tcacaacaattggcgtccaccgcaggacaatgagaacaaatcatta |
9103200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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