View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_high_10 (Length: 491)
Name: NF4513_high_10
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Complemental strand, 29116790 - 29116323
Alignment:
| Q |
19 |
caattgtgtctatgatgtatctcaacattctctttgttgctactaagtgagacgattttggcttctccacgaatctactcacaatgcttacactatatgt |
118 |
Q |
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| T |
29116790 |
caattgtgtctatgatgtatctcaacattctctttgttgctactaagtgagacgattttggcttctccaggaatctactcacaatgcctacactatatgt |
29116691 |
T |
|
| Q |
119 |
caaatatggctttgtgttgcaaaggtatcttcgatgatccaataagtcttttgtattgagttggatccacttctctctcttttatttcatttcatagttt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| |
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| T |
29116690 |
caaatatggctttgtgttgcaaaggtatcttcgatgatccaatgagtcttttgtattgagttggatccacttctttctcttttatttcttttgatagttt |
29116591 |
T |
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| Q |
219 |
tggtcttggttcaatgggggttacatcaagatttcaatactccatctaaaaccttttaagaatttcactagc--atatctcttttgatgaattagaagcc |
316 |
Q |
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||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29116590 |
tggtcttggttcaataggggttacatcaagattgcaatattccatctaaaaccttttaagaatttcactagcatatatctcttttgatgaattagaagcc |
29116491 |
T |
|
| Q |
317 |
ctacttgttctttgaaactccatggcaaggaaatatgagatgtgaagtagatcaaccatctcaaattccttcatcaaatcattcttaaagtcgtttatgt |
416 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29116490 |
ctacttgttctttgaaactccatgcgaaggaaatatgaaatgtgacctagatcaaccatctcaaattccttcatcaaatcattcttaaattcgtttatgt |
29116391 |
T |
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| Q |
417 |
aagatccattgctacatgtgataagaaaatcatttacataaagatatagaatgattacccctttgctt |
484 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29116390 |
aagatccattgctacatgtgataagaaaatcatttacataaagatatagaatgattacccctttgctt |
29116323 |
T |
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