View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_high_18 (Length: 433)
Name: NF4513_high_18
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 26 - 387
Target Start/End: Original strand, 46121929 - 46122273
Alignment:
| Q |
26 |
gttgagagagggggcaaaatcttaaagaaataacaatccataaaaatctaatgttttcttgctaaaatttaaatttaagattccacaaaatccaatttgt |
125 |
Q |
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| T |
46121929 |
gttgagagagggggcaaaatcttaaagaaataacaatccataaaaatctaatgttttcttgctaaaattttactttaagatttcacaaaatccaatttgt |
46122028 |
T |
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| Q |
126 |
taaacaatccctcgaaattagatatannnnnnnnatcaacacaactttttttaaaatacaaatagtcttaattgaatnnnnnnnnntatcataaaaaata |
225 |
Q |
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| T |
46122029 |
taaacaatccctcgaaattagatatattttttttatcaacacaactttttttaaaatacaaatagtcttaattgaat-------------acaaaaaata |
46122115 |
T |
|
| Q |
226 |
agctttttaaatcctgtaaatcaccaaataccatcctccgtttttaaaatttgtacctatgcatttcccgttaaacccatccatcccacagagtgtgtct |
325 |
Q |
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||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
46122116 |
agctttttaaatcctgtaaatcaccaaattccatcccccgtttttaaaatttgtacctatgcatttcccgtcaaacccatccatcccacaga----gtct |
46122211 |
T |
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| Q |
326 |
acttaaaacgtcatctatctactgtcatgccgagaatcaatatttcctttttgacttattct |
387 |
Q |
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| T |
46122212 |
acttaaaacgtcatctatctactctcatgccgagaatcaatatttcctttttgactcattct |
46122273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 1152179 - 1152212
Alignment:
| Q |
111 |
caaaatccaatttgttaaacaatccctcgaaatt |
144 |
Q |
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| T |
1152179 |
caaaatccaatttattaaacaatccctcgaaatt |
1152212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 30385130 - 30385166
Alignment:
| Q |
108 |
ccacaaaatccaatttgttaaacaatccctcgaaatt |
144 |
Q |
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| T |
30385130 |
ccacaaaatccaatttattaaacaatccttcgaaatt |
30385166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 31067625 - 31067589
Alignment:
| Q |
108 |
ccacaaaatccaatttgttaaacaatccctcgaaatt |
144 |
Q |
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| T |
31067625 |
ccacaaaatccaatttattaaacaatccttcgaaatt |
31067589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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