View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_high_2 (Length: 705)
Name: NF4513_high_2
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_high_2 |
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| [»] scaffold0123 (1 HSPs) |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 604; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 5 - 684
Target Start/End: Original strand, 4499651 - 4500329
Alignment:
| Q |
5 |
agatggacatcatcaagaagacactacatttttaatttccaacagagtactaacggtgttaaatgaaaagggatataatatatattttaaaagaccttag |
104 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4499651 |
agattgacatcatcaagaagacactacatttttaatttctaacagagtactaacggtgttaaatgaaaagggatataatatatattttaaaagaccttag |
4499750 |
T |
|
| Q |
105 |
gggaggttaatgtttattataaaattaaaggggtctggtttttctgtgattgtgtgatgttacgcgtctattatggttgtattcatcatatcggccaaca |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4499751 |
gggaggttaatgtttattataaaattaaaggggtctggtttttctgtgattgtgtgatgttacgcgtctattatggttgtattcatcatatcggccaaca |
4499850 |
T |
|
| Q |
205 |
aatagcatcacgagcttggtttattcgatcacggtttaattaacgaaagagtttatattacaagcaaggatcctaaacgagtgtacagtagagtttatat |
304 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| |
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| T |
4499851 |
aatagcatcacgagcttggtttattcggtcacggtttaattaacgaaagagtttatattacaagcaaggatcctaaaccggcgtacagtacagtttatat |
4499950 |
T |
|
| Q |
305 |
tggaaagaatgcatgagcgtgcatatacgatcagttgacatggatgtttgagttgtcgtcgtcaacgggtggtttgaaccgcaaatagacatttgtggtg |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4499951 |
tggaaagaatgcatgagcgtgcatatacgatcggttgacatggatgtttgagttgttgtcgtcaacgggtggtttgaaccgcaaatagacgtttgtggtg |
4500050 |
T |
|
| Q |
405 |
tcatgcaaaacgagcctaaggcctattgaacagccgatgataaaaataattccgatacaatttgaaagcgaggaacacactcatattggccttaggcata |
504 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | || |
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| T |
4500051 |
tcatgcaaaacgagcctaaggccgattgaacagccgatgataaaaataattccgatacaatttgaaagcaaggaacacactcatattggccttagacgta |
4500150 |
T |
|
| Q |
505 |
tatgagtgtcactcgctttcatattgtaaaatggctaaagcaatgtgggacacttgagaaaccctctgtgggggtaccatagacgttaaacaatcaaaga |
604 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |
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| T |
4500151 |
tatgagtgtcactcgctttcatattgtaaaatgactaaagcaatgtgggacacttgag-aaccctctatgggggtaccaaagacgttaaacaatcaaaga |
4500249 |
T |
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| Q |
605 |
ttaatacacttactcaataatatgagttgtttcatatgaaataagatgaaaacctcacttctattcaaatgagatttact |
684 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4500250 |
ttaatacacttactcaataatatgagttgtttcatatgaaataagatgaaaacctcacttctattcaaatgagatttact |
4500329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 464 - 684
Target Start/End: Complemental strand, 14137107 - 14136887
Alignment:
| Q |
464 |
atttgaaagcgaggaacacactcatattggccttaggcatatatgagtgtcactcgctttcatattgtaaaatggctaaagcaatgtgggacacttgaga |
563 |
Q |
| |
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||||||||||||| |||| |||||| | |||| | || || |||||| || |||| ||||| ||||||||| |||||| | |||||||||||| || |
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| T |
14137107 |
atttgaaagcgagaaacatactcatctctgcctcatgcgtaaatgagtatcgctcgatttcacattgtaaaacatctaaagtagtgtgggacactttcga |
14137008 |
T |
|
| Q |
564 |
aaccctctgtgggggtaccatagacgttaaacaatcaaagattaatacacttactcaataatatgagttgtttcatatgaaataagatgaaaacctcact |
663 |
Q |
| |
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||| | | |||||||| ||| || |||||||||||||||||||||| |||||| |||||||||||||||||||| || |||||||| | || || |
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| T |
14137007 |
aacttttcacgagggtaccaaagatgtcaaacaatcaaagattaatacacccactcaacaatatgagttgtttcatatggaagaagatgaagccatctct |
14136908 |
T |
|
| Q |
664 |
tctattcaaatgagatttact |
684 |
Q |
| |
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|| || ||||||||||||||| |
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| T |
14136907 |
tccatgcaaatgagatttact |
14136887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 516 - 684
Target Start/End: Original strand, 13119533 - 13119701
Alignment:
| Q |
516 |
ctcgctttcatattgtaaaatggctaaagcaatgtgggacacttgagaaaccctctgtgggggtaccatagacgttaaacaatcaaagattaatacactt |
615 |
Q |
| |
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|||| ||||| |||||||| ||||||| |||||||||| ||| || || ||| || ||||||| ||| || || |||||||| ||||||||||| |
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| T |
13119533 |
ctcggtttcacattgtaaaccagctaaagaaatgtgggacgctttggagactctccatgagggtaccgaagatgtcaaccaatcaaatattaatacactc |
13119632 |
T |
|
| Q |
616 |
actcaataatatgagttgtttcatatgaaataagatgaaaacctcacttctattcaaatgagatttact |
684 |
Q |
| |
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|||||| ||||| |||||||||||||| || ||||||||| | || ||| || ||||||||||||||| |
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| T |
13119633 |
actcaacaatatcagttgtttcatatggaagaagatgaaaccatctctttcatgcaaatgagatttact |
13119701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 363 - 488
Target Start/End: Original strand, 17689316 - 17689442
Alignment:
| Q |
363 |
tcgtcaacgggtggtttgaaccgcaaatagacatttgtggtgtcatgcaaaacgagcctaaggcctattgaacagccgatgataa-aaataattccgata |
461 |
Q |
| |
|
|||||||||| |||||||||||||||||| | || | ||||||||||||||| |||||||| | |||| ||| | |||||||| || || || ||| |
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| T |
17689316 |
tcgtcaacggatggtttgaaccgcaaatatatgttggcggtgtcatgcaaaacaagcctaagatcgattggacaactgatgataagaagaaagtctaata |
17689415 |
T |
|
| Q |
462 |
caatttgaaagcgaggaacacactcat |
488 |
Q |
| |
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| |||||||||||| ||||| |||||| |
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| T |
17689416 |
cgatttgaaagcgatgaacatactcat |
17689442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0123 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0123
Description:
Target: scaffold0123; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 302 - 420
Target Start/End: Original strand, 13292 - 13410
Alignment:
| Q |
302 |
tattggaaagaatgcatgagcgtgcatatacgatcagttgacatggatgtttgagttgtcgtcgtcaacgggtggtttgaaccgcaaatagacatttgtg |
401 |
Q |
| |
|
||||||||||||||||||||||||||||| | || ||||||| | |||||| || ||||||| | || || | ||||||||||||||||| || || |
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|
| T |
13292 |
tattggaaagaatgcatgagcgtgcatattcaattggttgacacgtatgtttcagatgtcgtcataaataggagatttgaaccgcaaatagatgttaatg |
13391 |
T |
|
| Q |
402 |
gtgtcatgcaaaacgagcc |
420 |
Q |
| |
|
||||||| |||||| |||| |
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|
| T |
13392 |
gtgtcatacaaaacaagcc |
13410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 302 - 420
Target Start/End: Complemental strand, 17794862 - 17794744
Alignment:
| Q |
302 |
tattggaaagaatgcatgagcgtgcatatacgatcagttgacatggatgtttgagttgtcgtcgtcaacgggtggtttgaaccgcaaatagacatttgtg |
401 |
Q |
| |
|
||||| ||||||||||||||||||||||| | || ||||||| | |||||| || ||||||| | || || | ||||||||||||||||| || || |
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|
| T |
17794862 |
tattgaaaagaatgcatgagcgtgcatattcaattggttgacacgtatgtttcagatgtcgtcataaataggagatttgaaccgcaaatagatgttaatg |
17794763 |
T |
|
| Q |
402 |
gtgtcatgcaaaacgagcc |
420 |
Q |
| |
|
||||||| |||||| |||| |
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| T |
17794762 |
gtgtcatacaaaacaagcc |
17794744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 595 - 684
Target Start/End: Complemental strand, 9653548 - 9653462
Alignment:
| Q |
595 |
caatcaaagattaatacacttactcaataatatgagttgtttcatatgaaataagatgaaaacctcacttctattcaaatgagatttact |
684 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||| ||| | ||| || ||||||| || ||||||||| ||||| ||||||||| |
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|
| T |
9653548 |
caatcaaagattaatacacttactcatcaatacgagttatttgacatggaagaagatgagaa---cacttctatgcaaattagatttact |
9653462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 128
Target Start/End: Complemental strand, 41805249 - 41805206
Alignment:
| Q |
85 |
tatattttaaaagaccttaggggaggttaatgtttattataaaa |
128 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| |||||||||| |
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|
| T |
41805249 |
tatattttaaaagatcttaggggaggtttatgtctattataaaa |
41805206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 302 - 388
Target Start/End: Complemental strand, 14635966 - 14635880
Alignment:
| Q |
302 |
tattggaaagaatgcatgagcgtgcatatacgatcagttgacatggatgtttgagttgtcgtcgtcaacgggtggtttgaaccgcaa |
388 |
Q |
| |
|
|||||||||||||| |||||||| || || | ||| || || |||||||| || | |||||| | ||||||||||||| |||||||| |
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|
| T |
14635966 |
tattggaaagaatggatgagcgttcacatccaatcggtagatatggatgtgtgggatgtcgtggccaacgggtggtttcaaccgcaa |
14635880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 39673807 - 39673766
Alignment:
| Q |
87 |
tattttaaaagaccttaggggaggttaatgtttattataaaa |
128 |
Q |
| |
|
|||||||||||| |||||||||||||||| | |||||||||| |
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|
| T |
39673807 |
tattttaaaagaacttaggggaggttaatatctattataaaa |
39673766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 39673884 - 39673843
Alignment:
| Q |
90 |
tttaaaagaccttaggggaggttaatgtttattataaaatta |
131 |
Q |
| |
|
||||||||| |||||||||||||||| | ||||||||||||| |
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|
| T |
39673884 |
tttaaaagaacttaggggaggttaatatctattataaaatta |
39673843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 13606496 - 13606444
Alignment:
| Q |
302 |
tattggaaagaatgcatgagcgtgcatatacgatcagttgacatggatgtttg |
354 |
Q |
| |
|
||||||||||| ||||||||||| ||||| | ||| || |||||||||||||| |
|
|
| T |
13606496 |
tattggaaagagtgcatgagcgttcatatccaatcggtggacatggatgtttg |
13606444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 378
Target Start/End: Complemental strand, 24374091 - 24374015
Alignment:
| Q |
301 |
atattggaaagaatgcatgagcgtgcatatacgatcagttgacatggatgtttgagttgtcgtcgtcaacgggtggtt |
378 |
Q |
| |
|
||||||| |||||||||||||||| ||||| | ||| ||||||||| ||| ||| | |||||| ||||||||| |||| |
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|
| T |
24374091 |
atattggtaagaatgcatgagcgttcatatccaatcggttgacatgaatg-ttgggatgtcgtggtcaacgggcggtt |
24374015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 576 - 684
Target Start/End: Original strand, 5424 - 5532
Alignment:
| Q |
576 |
gggtaccatagacgttaaacaatcaaagattaatacacttactcaataatatgagttgtttcatatgaaataagatgaaaacctcacttctattcaaatg |
675 |
Q |
| |
|
||||||| ||||||||| || |||||||||||||||||||| | ||||| |||| ||||| ||| || | |||| |||| || |||| || ||||| |
|
|
| T |
5424 |
gggtaccgaagacgttaagtaaacaaagattaatacacttacttatcaatataagttatttcacatggaagaggatggaaacatctcttccatgtaaatg |
5523 |
T |
|
| Q |
676 |
agatttact |
684 |
Q |
| |
|
||||||||| |
|
|
| T |
5524 |
agatttact |
5532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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