View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_high_20 (Length: 428)
Name: NF4513_high_20
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 45974716 - 45974301
Alignment:
| Q |
1 |
aaatgatgccaacttttttatggagatcggcattannnnnnnnattaagttaggaaggaatagaaattttattttctgattaaaattatcaacaaattat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974716 |
aaatgatgccaacttttttatggagatcggcattattttttttattaagttaggaaggaatagaaattttattttctgattaaaattatcaacaaattat |
45974617 |
T |
|
| Q |
101 |
tacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactgtgacaaccgattagaacttcgaatgaaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45974616 |
tacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactgtgacaacctattagaacttcgaatgaaga |
45974517 |
T |
|
| Q |
201 |
tgggaaaggttgataccaacatga-----ttgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataaaatggacatttctgctatatatgct |
295 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974516 |
tgggaaaggttgataccaacatgacatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataaaatggacatttctgctatatatgct |
45974417 |
T |
|
| Q |
296 |
tccaaaggtaaccaaaatatcattcattgttctgaaacatgaattaattttcacaggttgaacttcttagttctgtgttgaacatttctggttgcaggcc |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974416 |
gccaaaggtaaccaaaatatcattcattgttctgaaacatgaattaattttcacaggttgaacttcttagttctgtgttgaacatttctggttgcaggcc |
45974317 |
T |
|
| Q |
396 |
tctctaatacaaaatt |
411 |
Q |
| |
|
|||||||||||||||| |
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| T |
45974316 |
tctctaatacaaaatt |
45974301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 72 - 411
Target Start/End: Original strand, 45857200 - 45857540
Alignment:
| Q |
72 |
ttttctgattaaaattatcaacaaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactg |
171 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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|
| T |
45857200 |
ttttctgattgaaattattaacaaattattagctaatattatatgttgaactttaagtcagtagatttttacatttatgattgtgttcctgtagagatca |
45857299 |
T |
|
| Q |
172 |
tgacaaccgatt-agaacttcgaatgaagatgggaaaggttgataccaacatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataa |
270 |
Q |
| |
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||| ||| | | ||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
45857300 |
tgataactgcctcagaacttcgaatgaagatgggaaagcttaacaccaacatgattgaagagacaggaaaagtgaaagcaaaaaggattgacaacaataa |
45857399 |
T |
|
| Q |
271 |
aatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattgttctgaaacatgaattaattttcacaggttgaacttcttagttctg |
370 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| |
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| T |
45857400 |
aatggacatttctgctatatatgctgccaaaggtaaccaaaatatcattcattgttctgcaacatgaattaattttcacaggctgaactctatagttctg |
45857499 |
T |
|
| Q |
371 |
tgttgaacatttctggttgcaggcctctctaatacaaaatt |
411 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| ||||| |
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|
| T |
45857500 |
atttgaacatttctggatgcaggcctatctaatacgaaatt |
45857540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 72 - 411
Target Start/End: Original strand, 45869754 - 45870093
Alignment:
| Q |
72 |
ttttctgattaaaattatcaacaaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactg |
171 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| | |||||| |
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|
| T |
45869754 |
ttttctgattgaaattattaacaaattattagctaatattatatgttgaactttaagtcagtagatttttacaattatgattgtgttcct-tagagatca |
45869852 |
T |
|
| Q |
172 |
tgacaaccgatt-agaacttcgaatgaagatgggaaaggttgataccaacatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataa |
270 |
Q |
| |
|
|||| |||| | ||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
45869853 |
tgactaccgcctcagaacttcgaatgaagatgggaaagcttaacaccaacatgattgaagagacaggaaaagtgaaagcaaaaaggattgacaacaataa |
45869952 |
T |
|
| Q |
271 |
aatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattgttctgaaacatgaattaattttcacaggttgaacttcttagttctg |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||| | |||||||| |
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| T |
45869953 |
aatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattcttctgcaacatgaattaattttcacaggctgaactccatagttctg |
45870052 |
T |
|
| Q |
371 |
tgttgaacatttctggttgcaggcctctctaatacaaaatt |
411 |
Q |
| |
|
|||||| ||||||| ||||||||| |||||||| ||||| |
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|
| T |
45870053 |
atttgaacttttctggatgcaggcctatctaatacgaaatt |
45870093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 219 - 409
Target Start/End: Complemental strand, 45965089 - 45964899
Alignment:
| Q |
219 |
acatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataaaatggacatttctgctatatatgcttccaaaggtaaccaaaatatcat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45965089 |
acatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataaaatggacatttctgctatatatgcttccaaaggtaaccaaaatatcat |
45964990 |
T |
|
| Q |
319 |
tcattgttctgaaacatgaattaattttcacaggttgaacttcttagttctgtgttgaacatttctggttgcaggcctctctaatacaaaa |
409 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
45964989 |
tcattgttctgaaacatgaattaattttcacaggttgaacttcttagttctgtgttgaacatttctggttgcaggccactctaatacaaaa |
45964899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 72 - 411
Target Start/End: Complemental strand, 45981083 - 45980753
Alignment:
| Q |
72 |
ttttctgattaaaattatcaacaaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactg |
171 |
Q |
| |
|
|||||||||| ||||||| |||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| || ||||| | |
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|
| T |
45981083 |
ttttctgattgaaattattaacaaactattagctaatattatatgttgaactttaagtcagtagatttttacatttatggttgtgttcctgcagagatta |
45980984 |
T |
|
| Q |
172 |
tgacaaccgatt-agaacttcgaatgaagatgggaaaggttgataccaacatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataa |
270 |
Q |
| |
|
||||||||| | |||||||| | | ||||| |||||| | ||||||| |||||||| ||| |||||||||||||||||||||| |||||||||||| |
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|
| T |
45980983 |
tgacaaccgcctcagaacttcaactcaagataggaaagctaaccaccaacaagattgaagggaccggaaaaatgaaagcaaaaaggattgacaacaataa |
45980884 |
T |
|
| Q |
271 |
aatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattgttctgaaacatgaattaattttcacaggttgaacttcttagttctg |
370 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||| || |||||||| |
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|
| T |
45980883 |
aatggacatttctgctatatatgcttctaaaggtaaccaaaatattattcattgttct---acatgaattaattttcacagg-------tcatagttctg |
45980794 |
T |
|
| Q |
371 |
tgttgaacatttctggttgcaggcctctctaatacaaaatt |
411 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45980793 |
aattgaacatttctgcttgcaggcctctctaatacaaaatt |
45980753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 69 - 214
Target Start/End: Complemental strand, 45970131 - 45969985
Alignment:
| Q |
69 |
ttattttctgattaaaattatcaacaaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagaga |
168 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| |||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| |
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|
| T |
45970131 |
ttattttctgattaaaattaacaaaaaattattagctaacgttatatgttaaactttaagtcagtagatttttacatttatgattgtgttcctgtagaga |
45970032 |
T |
|
| Q |
169 |
ctgtgacaa-ccgattagaacttcgaatgaagatgggaaaggttgat |
214 |
Q |
| |
|
| |||||| || | |||||||||||||||||||||||||||||| |
|
|
| T |
45970031 |
ttatgacaaccccctcggaacttcgaatgaagatgggaaaggttgat |
45969985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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