View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_high_21 (Length: 426)
Name: NF4513_high_21
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 197 - 418
Target Start/End: Complemental strand, 46748521 - 46748310
Alignment:
| Q |
197 |
ttattgttatgatcatttgttccatcattaattattacacacataagataaaccatacttcaacatcaatcaacattttatacacatttgccatgaggct |
296 |
Q |
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| T |
46748521 |
ttattgttatgatcatttgttccatcattaattattacacacataagataaaccatacttcaacag----------tttatatacatttgccatgaggtt |
46748432 |
T |
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| Q |
297 |
ttccatataatgcctcggttatgcctctaatagttttgggagtggtcctacagcagccaccaaaaagggtagccccagcataacgccactttcctatgta |
396 |
Q |
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| T |
46748431 |
ttccatataatgcctcggttatgcctctaatagttttgggagtggtcctacagcagccaccaaaaagggtagccccagcataacgccactttcctatgta |
46748332 |
T |
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| Q |
397 |
agggacaaaatcttcctatgct |
418 |
Q |
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| T |
46748331 |
agggacaaaatcttcctctgct |
46748310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 46748642 - 46748552
Alignment:
| Q |
16 |
tatcattcaaaagtttgcacaaacggaaacaggtagggcaagtaatttatattatagaaattagagattgtttggcatatatccaatttgt |
106 |
Q |
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| T |
46748642 |
tatcattcaaaagtttgcacaaacggaaacaggtagggcaagtaatttatattatagaaattagagattgtttggcatatatccaatttgt |
46748552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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