View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_high_22 (Length: 418)
Name: NF4513_high_22
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 11 - 400
Target Start/End: Complemental strand, 36575403 - 36575014
Alignment:
| Q |
11 |
catcatcaattaagctttgctttcacttctcaagattaccacgaggctcttgaaaaatccattctcttctttgaaggacaacgatctggaaaattaccat |
110 |
Q |
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| T |
36575403 |
catcatcaattaagctttgctttcacttctcaagattaccacgaggctcttgaaaaatccattctcttctttgaaggacaacgatctggaaaattaccat |
36575304 |
T |
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| Q |
111 |
ctaaccagaaactaacatggagaggagattctggattatcagatggctcttcttatcatgtattatacatactcatttgcatgactcattttttatatgt |
210 |
Q |
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| T |
36575303 |
ctaaccagaaactaacatggagaggagattctggattatcagatggctcttcttatcatgtattatacatactcatttgcatgactcattttttatatgt |
36575204 |
T |
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| Q |
211 |
aagtttaatataacatgcatgttaattatttgtttgattattctctatatgtatattggttcaggtggacctaattggaggttattatgatgctggtgat |
310 |
Q |
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| T |
36575203 |
aagtttaatataacatgcatgttaattatttgtttgattattctctatatgtatattggttcaggtggacctaattggaggttattatgatgctggtgat |
36575104 |
T |
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| Q |
311 |
aaccttaagtttgggcttccaatggcttttactacaacattattagcatggagtgtcattgaatttggaagctcaatgcaggaccagatt |
400 |
Q |
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| T |
36575103 |
aaccttaagtttgggcttccaatggcttttactacaacattattagcatggagtgtcattgaatttggaagctcaatgcaggaccagatt |
36575014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 39419629 - 39419569
Alignment:
| Q |
285 |
ttggaggttattatgatgctggtgataaccttaagtttgggcttccaatggcttttactac |
345 |
Q |
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| T |
39419629 |
ttggagggtattatgatgctggtgacaatgtcaagtttggttttcctatggcttttactac |
39419569 |
T |
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