View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_high_25 (Length: 399)
Name: NF4513_high_25
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 12 - 380
Target Start/End: Complemental strand, 36757715 - 36757347
Alignment:
| Q |
12 |
atagggcaagtgatgggatgagttccatttagtgtggaattctatttgctttgttttgatttgttaaatatatacccagacaacaatcctccatggtgta |
111 |
Q |
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| T |
36757715 |
atagggtaagtaatgggatgagttccatttagtgtggaattctatttgctttgttttgatttgttaaatatatacccagacaacaatcctccatggtgta |
36757616 |
T |
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| Q |
112 |
taatgcaagatttcaatgataacctttcaaatgacgataaaacgtgccaatttgaacaccctcctcggcaatttaagggttcaaagaaacagtattggat |
211 |
Q |
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| T |
36757615 |
taatgcaagatttcaatgataacttttcaaatgacgataaaacgtgccaatttgaacaccctcctcggcaatttaagggttcaaagaaacagtattggat |
36757516 |
T |
|
| Q |
212 |
tgcaatttaatgaatttactgctgaaagggtatcaatacacttggagtaggagagaagcacaatgacaaggttgttcaagttcgaaaacacatggttaga |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36757515 |
tgcaatttaatgaatttactgctgaaagggtatcaatacacttggagtaggagagaagcacaatgacaaggttgttcaagttcgaaaacacatggttaga |
36757416 |
T |
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| Q |
312 |
tgaggagaaggatatcgaagatgtagtgcttatggttacaggttggaatggcaacggaggtggagagtt |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36757415 |
tgaggagaaggatatcgaagatgtagtgcttatggttacaggttggaatggcaacggaggtggagagtt |
36757347 |
T |
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