View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4513_high_28 (Length: 344)
Name: NF4513_high_28
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_high_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 97 - 334
Target Start/End: Complemental strand, 1977750 - 1977513
Alignment:
| Q |
97 |
ttctagcactgatcttgttaacaagccacctttgatggatgaaatcgctattccttctgttgagcaacttgtgcttgcaggagttaatttcttacctaca |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1977750 |
ttctagcactgatcttgttaacaagccacctttgatggatgaaatcgctattccttctgttgagcaacttgtgcttgcaggagttaatttcttacctaca |
1977651 |
T |
|
| Q |
197 |
aatggaagcatatcaagcattagttttgatgctaaaacaaacacttttcaccttcccatgattagattggatgttaacaccgaagtttttctaagaaact |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1977650 |
aatggaagcatatcaagcattagttttgatgctaaaacaaacacttttcaccttcccatgattagattggatgttaacaccgaagtttttctaagaaact |
1977551 |
T |
|
| Q |
297 |
tggttgcatatgaatcatcggttggatcgggacctttg |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1977550 |
tggttgcatatgaatcatcggttggatcgggacctttg |
1977513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 123 - 334
Target Start/End: Complemental strand, 1984645 - 1984434
Alignment:
| Q |
123 |
cacctttgatggatgaaatcgctattccttctgttgagcaacttgtgcttgcaggagttaatttcttacctacaaatggaagcatatcaagcattagttt |
222 |
Q |
| |
|
|||| ||| |||| ||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
1984645 |
cacccttggtggaggaaatcgctattccttctgttgaacaacttgtgactgcaggggttaatttcttacctgcaaaaggaagcatatcaagcattagttt |
1984546 |
T |
|
| Q |
223 |
tgatgctaaaacaaacacttttcaccttcccatgattagattggatgttaacaccgaagtttttctaagaaacttggttgcatatgaatcatcggttgga |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
1984545 |
tgatgctaaaacaaacacttttcaccttcccacaattagtttggatgtcaacaccgaagtttttcttcgaaacttggttgcatacgaatcatcggttgga |
1984446 |
T |
|
| Q |
323 |
tcgggacctttg |
334 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1984445 |
tcgggacctttg |
1984434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 109 - 330
Target Start/End: Original strand, 1948668 - 1948889
Alignment:
| Q |
109 |
tcttgttaacaagccacctttgatggatgaaatcgctattccttctgttgagcaacttgtgcttgcaggagttaatttcttacctacaaatggaagcata |
208 |
Q |
| |
|
|||| ||||||||||||||||||| || |||||| |||||||||||||| | |||||||| ||||||| ||||| | ||||| ||||| |||||| |
|
|
| T |
1948668 |
tcttattaacaagccacctttgattgaagaaatcactattccttctgttaaagaacttgtgaaatcaggagtgaatttttctcctactaatgggagcata |
1948767 |
T |
|
| Q |
209 |
tcaagcattagttttgatgctaaaacaaacacttttcaccttcccatgattagattggatgttaacaccgaagtttttctaagaaacttggttgcatatg |
308 |
Q |
| |
|
||||| |||||||||||||| ||||||| |||||| ||||||| || || | ||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
1948768 |
tcaagtattagttttgatgcaaaaacaagaactttttaccttcctattatcggtttggatgttaataccgaagtttttctaagaaacttggttgcgtatg |
1948867 |
T |
|
| Q |
309 |
aatcatcggttggatcgggacc |
330 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1948868 |
aatcatcggttggatcgggacc |
1948889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 1977828 - 1977789
Alignment:
| Q |
19 |
taaacttctaaaacaacctgttgaatctttatttttctct |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1977828 |
taaacttctaaaacaacctgttgaatctttatttttctct |
1977789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 1948581 - 1948620
Alignment:
| Q |
19 |
taaacttctaaaacaacctgttgaatctttatttttctct |
58 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1948581 |
taaacttctaaaacaacctattgaatctttatttttctct |
1948620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University