View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_high_34 (Length: 297)
Name: NF4513_high_34
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_high_34 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 2 - 282
Target Start/End: Complemental strand, 33870301 - 33870018
Alignment:
| Q |
2 |
catcatcgtcatcaatcgataattagaggtagaatcttct---gaaatcttctcaacttctaattgtcgccactttttcaccattttctcaaatgccact |
98 |
Q |
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| T |
33870301 |
catcatcgtcatcaatcgatgattagaggtagaatcttcttctgaaatcttctcaacttctaattgtcgccactttttcaccattttctcaaatgccact |
33870202 |
T |
|
| Q |
99 |
catactctcactcctttgagaggatttaatatcggcaaaaaatacaaccttactatacgaggtgcttcacttgtggcgatttgtatacatgaatcttaac |
198 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || | ||||||||||||||| |
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| T |
33870201 |
catactctcactcctttgagaggatttaataccggcaaaaaatacaaccttactatacgaggtgcttcacctgtggcgaattttttacatgaatcttaac |
33870102 |
T |
|
| Q |
199 |
catgggtggtcatgaagttgagatataatgatattccttgtttgtgattaatttactcaatttcttgttttcaattttgcgatt |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33870101 |
catgggtggtcatgaagttgagatataatgatattccttgtttgtgattaatttactcaatttcttgttttgaattttgcgatt |
33870018 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 7741022 - 7740976
Alignment:
| Q |
51 |
tcaacttctaattgtcgccactttttcaccattttctcaaatgccac |
97 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7741022 |
tcaatttctaattgtcgccactttttcaccatattctcaaatgccac |
7740976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 18895242 - 18895292
Alignment:
| Q |
48 |
ttctcaacttctaattgtcgccactttttcaccattttctcaaatgccact |
98 |
Q |
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|||||||| ||||||||||||||| || ||||||| ||||||||||||||| |
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| T |
18895242 |
ttctcaacctctaattgtcgccaccttctcaccatcttctcaaatgccact |
18895292 |
T |
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