View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4513_high_39 (Length: 284)
Name: NF4513_high_39
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_high_39 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 26454792 - 26455066
Alignment:
| Q |
1 |
ttttttgtgtagctatcaacttgaagcattggataaagcgattcgcgaaaatactatagtgtacttggagactggttgtggaaagactttgatagccatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26454792 |
ttttttgtgtagctatcaacttgaagcattggataaagcgattcgcgaaaatactatagtgtacttggagactggttgtggaaagactttgatagccatc |
26454891 |
T |
|
| Q |
101 |
atgcttcttcgaagctacacttatcacctccgaaagccttctccttacattgctgnnnnnnnggttcccaaagttgttttggtttctcaagtattatgct |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26454892 |
atgcttcttcgaagctacgcttatcacctccgaaagccttctccttacattgctgtttttttggttcccaaagttgttttggtttctcaagtattatgct |
26454991 |
T |
|
| Q |
201 |
accactttcatctctttcacaataactttgcgaatttcagatacattctctgatgaatgatttctatgtgatgat |
275 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26454992 |
gccactttcatctcttttacaataactttgcgaatttcagatacattctctgatgaattatttctatgtgatgat |
26455066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 26446614 - 26446883
Alignment:
| Q |
1 |
ttttttgtgtagctatcaacttgaagcattggataaagcgattcgcgaaaatactatagtgtacttggagactggttgtggaaagactttgatagccatc |
100 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
26446614 |
ttttttgtatagttatcaacttgaagcattggataaagcgattcgcgaaaatactatagtgtacttggagattggtcgtggaaagactttgatagccatc |
26446713 |
T |
|
| Q |
101 |
atgcttcttcgaagctacacttatcacctccgaaagccttctccttacattgctgnnnnnnnggttcccaaagttgttttggtttctcaagtattatgct |
200 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26446714 |
atgcttctttgaagctacgcttatcacctccgaaagccttctccttacattgctattttttttattcccaaagttgttttggtttctcaagtattatgct |
26446813 |
T |
|
| Q |
201 |
accactttcatctctttcacaataactttgcgaatttcagatacattctctgatgaatgatttctatgtgatgat |
275 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
26446814 |
gccactttcatctcttttacaataactttgagaatttcata-----tctctgatgaatgatttctatgtgatgat |
26446883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 26448942 - 26448801
Alignment:
| Q |
1 |
ttttttgtgtagctatcaacttgaagcatt------ggataaagcgattcgcgaaaatactatagtgtacttggagactggttgtggaaagactttgata |
94 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||| |||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
26448942 |
ttttttgtgtagctatcaacttaaagcattttccatggataaagtgattcgtgaaaatactatagtgtacttggagcctggttgtggagagactttgata |
26448843 |
T |
|
| Q |
95 |
gccatcatgcttcttcgaagctacacttatcacctccgaaag |
136 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
26448842 |
gccatcatgcttctttgaagctacgcttatcacctctgaaag |
26448801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 130 - 275
Target Start/End: Complemental strand, 26447813 - 26447667
Alignment:
| Q |
130 |
ccgaaagccttctccttacattgctgnnnnnnn-ggttcccaaagttgttttggtttctcaagtattatgctaccactttcatctctttcacaataactt |
228 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||||||| || |||||| |||||||||||||||| | |||||||| |
|
|
| T |
26447813 |
ccgaaagccttctccttacattgcttttttttttggttcccaaagttgttttgggttctcaaatactatgctgccactttcatctcttttataataactt |
26447714 |
T |
|
| Q |
229 |
tgcgaatttcagatacattctctgatgaatgatttctatgtgatgat |
275 |
Q |
| |
|
|| |||||||||||||||||| | ||||||||||| ||||||||||| |
|
|
| T |
26447713 |
tgtgaatttcagatacattctataatgaatgatttttatgtgatgat |
26447667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 275
Target Start/End: Original strand, 29673694 - 29673961
Alignment:
| Q |
8 |
tgtagctatcaacttgaagcattggataaagcgattcgcgaaaatactatagtgtacttggagactggttgtggaaagactttgatagccatcatgcttc |
107 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29673694 |
tgtagctaccaacttgaagcattggataaagcaatccgcgaaaatactatagtttacttagagactggttgtggaaagactttgatagccatcatgcttc |
29673793 |
T |
|
| Q |
108 |
ttcgaagctacacttatcacctccgaaagccttctccttacattgctgnnnnnnnggttcccaaagttgttttggtttctcaagtattatgctaccactt |
207 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29673794 |
ttcgaagctacgcttatcacctccgaaagccttctccttacattgctgtttttttggttcccaaagttgttttggtttctcaagtattatgctgccactt |
29673893 |
T |
|
| Q |
208 |
tcatctctttcacaataactttgcgaatttcagatacattctctgatgaatgatttctatgtgatgat |
275 |
Q |
| |
|
|| | ||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29673894 |
tcctatcttttattataactttgcgaatttcagatacatcctctgatgaatgatttctatgtgatgat |
29673961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 11495693 - 11495443
Alignment:
| Q |
10 |
tagctatcaacttgaagcattggataaagcgattcgcgaaaatactatagtgtacttggagactggttgtggaaagactttgatagccatcatgcttctt |
109 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| || |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11495693 |
tagctatcagcttgaagcattggaaaaagcgatccgtgaaaataccatagtgtacttggagactggttctggaaagactttgatagccatcatgcttctt |
11495594 |
T |
|
| Q |
110 |
cgaagctacacttatcacctccgaaagccttctccttacattgctgnnnnnnnggttcccaaagttgttttggtttctcaagtattatgctaccactttc |
209 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| | ||||| |
|
|
| T |
11495593 |
cgaagctacgcttatcacctccgaaagccttctccttacattgctgtgtttttggttcccaaagttgttttggtttctcaagtatgctgctgctactttg |
11495494 |
T |
|
| Q |
210 |
atctctttcacaataactttgcgaatttcagatacattctctgatgaatga |
260 |
Q |
| |
|
|||||||| | |||||||| || |||| ||||| ||| |||||||||||| |
|
|
| T |
11495493 |
atctcttttataataacttggcatatttgagatatattgtctgatgaatga |
11495443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University