View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_high_41 (Length: 276)
Name: NF4513_high_41
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_high_41 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 41920533 - 41920291
Alignment:
| Q |
19 |
acagctccccattttgggactgcaacttcaggtaccaaaactgttgcaggtagaacaatgcaataaaacacaaacgtattgatgtgtgctatcactttcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41920533 |
acagctccccattttgggactgcaacttcaggtaccaaaactgttgcaggtagaacaatgcaataaaacacaaacgtattgatgtgtgctatcactttcc |
41920434 |
T |
|
| Q |
119 |
gaacaaagaagaaactgtaaattacatgtatcttcttccacaaggacactttctgcaatgtatacacattattagcatgagtatattttgtactgtagat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41920433 |
gaacaaagaagaaactgtaaattacatgtatcttcttccacaaggacactttctgcaatgcatacacattattagcatgagtatattttgtactgtagat |
41920334 |
T |
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| Q |
219 |
tgaaaataattcaacgaagcaaccttaaacttaccttgtttct |
261 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41920333 |
tgaaaataattcaacgaagcaacattaaacttaccttgtttct |
41920291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 26830785 - 26830944
Alignment:
| Q |
19 |
acagctccccattttgggactgcaacttcaggtaccaaaactgttgcaggtagaacaatgcaataaaacacaaacgtattgatgtgtgctatcactttcc |
118 |
Q |
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|||||||||||||| ||||| |||| |||||||||| ||| |||||||||| ||||||||||| || ||||| || |||||||| || | | |||| |
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| T |
26830785 |
acagctccccatttagggaccacaacctcaggtaccataacagttgcaggtaacacaatgcaatagaaaacaaatgtgttgatgtgggccacaatcttcc |
26830884 |
T |
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| Q |
119 |
gaacaaagaagaaactgtaaattacatgtatcttcttccacaaggacactttctgcaatg |
178 |
Q |
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|||||||||| |||||||||| |||| ||||||||||||||| |||||||||||||||| |
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| T |
26830885 |
gaacaaagaaaaaactgtaaacaacatatatcttcttccacaaagacactttctgcaatg |
26830944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 26790531 - 26790591
Alignment:
| Q |
118 |
cgaacaaagaagaaactgtaaattacatgtatcttcttccacaaggacactttctgcaatg |
178 |
Q |
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|||| |||||| |||||||||| | ||||| ||||||| |||| |||||||||||||||| |
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| T |
26790531 |
cgaataaagaaaaaactgtaaacaatatgtagcttcttcaacaaagacactttctgcaatg |
26790591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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