View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4513_high_46 (Length: 256)
Name: NF4513_high_46
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_high_46 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 30620598 - 30620370
Alignment:
| Q |
17 |
tcatactcttcattacaccttccacctcatcagccggaagcatcctgtggcggtggtgatggtagcacaagtaacaataactcgataggtttatctatga |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
30620598 |
tcatactcttcattacacctcccacctcatcagccggaagcatcctgtggcggtggtgatggtagtacaagtaacaataactcaataggtttatctatga |
30620499 |
T |
|
| Q |
117 |
taaaaacatggctcagaaaccaaccacc---accagaaaacaacaacaataacaacaatgaaagtggtgcacgtgtgcagacactatcactttctatgag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30620498 |
taaaaacatggctcagaaaccaaccaccaccaccagaaaacaacaacaataacaacaatgaaagtggtgcacgtgtgcagacactatcactttctatgag |
30620399 |
T |
|
| Q |
214 |
tactggctcacagtcaagttcatctgtgc |
242 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30620398 |
tactggctcacagtcaagttcatctgtgc |
30620370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University