View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_high_5 (Length: 637)
Name: NF4513_high_5
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 528; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 1 - 597
Target Start/End: Original strand, 44574946 - 44575558
Alignment:
| Q |
1 |
tattatgttgataggacatcgcatgattctgacctaacctaacccgcaagtctactcagtcactcccttttgcaaccaacgccgtcactcttatcattca |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44574946 |
tattacgttgataggacatcgcatgattctgacctaacctaacccgcaagtctactcagtcactcccttttgcaaccaacgccgtcactcttatcattca |
44575045 |
T |
|
| Q |
101 |
ccaatcctcgtacgtagagaaattctttcaatggctgcagcaacagatttatatttacctgatgagtgttgc----------------tcttgaactgtt |
184 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
44575046 |
ccaatcgtcgtacgtagagaaattctttcaatggctgcagcaacagatttatatttacctgatgagtgttgggaacacatcttcaaattcttcaactgtt |
44575145 |
T |
|
| Q |
185 |
acggctacagcgacaactactacaacagctacttgaagtctctctccatcatctcaaaacagtttctctcaatcaccaatcgtctcaaactatcgctcat |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44575146 |
acggctacagcgacaactactacaacagctacttgaagtctctctccatcgtctcaaaacagtttctctcaatcaccaatcgtctcaaactatcactcat |
44575245 |
T |
|
| Q |
285 |
gatccgtgacaccacactccctttccccggtcaactcttccaaaggttccccaaacctcaccctcatgagctatcattgcttcttgcaattaacacaaac |
384 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44575246 |
gatccgtgacaccacactccctttcctcggtcaactcttccaaaggttccccaaacctcaccctcatgagctatcattgcttcttgcaattaacacaaac |
44575345 |
T |
|
| Q |
385 |
caataataattctatttctttgatggattttgttgtatgtcctaacttaaaaataaagtatctccatttctctggcaattattggttaagaactcaacac |
484 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44575346 |
caataataattctatttctttgatggattttgttgtatgtcctaacttaaaaataaagtatctccatttgtctggcaattattggttaagaactcaacac |
44575445 |
T |
|
| Q |
485 |
ttcaaaatgttctcttccatttttcccaatttgcaattacttgatttgagcttttgctattacatatccatagaagatatttgtgaatttgtcaaaaaca |
584 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44575446 |
ttcaaaatgttctcttccatttttcccaatttgcaattacttgatttgagcttttgctattacatatccatagaagatatttgtgaatttgtcaaaaaca |
44575545 |
T |
|
| Q |
585 |
agagttgatgatg |
597 |
Q |
| |
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||||||||||||| |
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| T |
44575546 |
agagttgatgatg |
44575558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 438 - 574
Target Start/End: Original strand, 32785575 - 32785711
Alignment:
| Q |
438 |
taaagtatctccatttctctggcaattattggttaagaactcaacacttcaaaatgttctcttccatttttcccaatttgcaattacttgatttgagctt |
537 |
Q |
| |
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|||||| ||||||||| || ||||||||||||||||| | || | ||| ||||| ||||| |||||| ||||||||||| ||||||||||||||| |
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| T |
32785575 |
taaagtttctccatttggctcgcaattattggttaagagatgaaagcatcaggatgttttcttctattttttccaatttgcaactacttgatttgagcta |
32785674 |
T |
|
| Q |
538 |
ttgctattacatatccatagaagatatttgtgaattt |
574 |
Q |
| |
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||||||| ||||||| ||||| ||||||| ||||| |
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| T |
32785675 |
ttgctataacatatctgaagaaggtatttgtcaattt |
32785711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 498 - 571
Target Start/End: Original strand, 1037524 - 1037597
Alignment:
| Q |
498 |
cttccatttttcccaatttgcaattacttgatttgagcttttgctattacatatccatagaagatatttgtgaa |
571 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||||| ||| || ||||||| ||||| |||||||||| |
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| T |
1037524 |
cttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaa |
1037597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 552
Target Start/End: Original strand, 12121317 - 12121371
Alignment:
| Q |
498 |
cttccatttttcccaatttgcaattacttgatttgagcttttgctattacatatc |
552 |
Q |
| |
|
||||| |||| |||||||||||||| ||||||||||| ||||||||| ||||||| |
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|
| T |
12121317 |
cttccgttttccccaatttgcaattgcttgatttgagtttttgctataacatatc |
12121371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 498 - 571
Target Start/End: Original strand, 55908588 - 55908661
Alignment:
| Q |
498 |
cttccatttttcccaatttgcaattacttgatttgagcttttgctattacatatccatagaagatatttgtgaa |
571 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||||| ||| || ||||||| ||||| |||||||||| |
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| T |
55908588 |
cttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaa |
55908661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 548320 - 548270
Alignment:
| Q |
214 |
tacttgaagtctctctccatcatctcaaaacagtttctctcaatcaccaat |
264 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||| ||||||||| |
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| T |
548320 |
tacttgaagtctctctctgttgtctcaaaacagtttctctccatcaccaat |
548270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 2486366 - 2486318
Alignment:
| Q |
222 |
gtctctctccatcatctcaaaacagtttctctcaatcaccaatcgtctc |
270 |
Q |
| |
|
|||||||||| || |||||||||||||||| || |||||||| |||||| |
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| T |
2486366 |
gtctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctc |
2486318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 44246646 - 44246591
Alignment:
| Q |
215 |
acttgaagtctctctccatcatctcaaaacagtttctctcaatcaccaatcgtctc |
270 |
Q |
| |
|
|||||| ||| ||||| ||| ||||||||||||||||||||||||| |||||||| |
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| T |
44246646 |
acttgacgtccctctctatcgtctcaaaacagtttctctcaatcactgatcgtctc |
44246591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 17626863 - 17626905
Alignment:
| Q |
129 |
caatggctgcagcaacagatttatatttacctgatgagtgttg |
171 |
Q |
| |
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|||||| ||||||| ||||||||||||||||| |||||||||| |
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| T |
17626863 |
caatggttgcagcagcagatttatatttacctaatgagtgttg |
17626905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 486 - 536
Target Start/End: Original strand, 18315121 - 18315171
Alignment:
| Q |
486 |
tcaaaatgttctcttccatttttcccaatttgcaattacttgatttgagct |
536 |
Q |
| |
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||||||| || ||||||||||| ||||||||||| || ||||||||||||| |
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|
| T |
18315121 |
tcaaaatattttcttccattttccccaatttgcagttgcttgatttgagct |
18315171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 6587906 - 6587947
Alignment:
| Q |
130 |
aatggctgcagcaacagatttatatttacctgatgagtgttg |
171 |
Q |
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|||||||||||||||| |||||||||||||| |||| ||||| |
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| T |
6587906 |
aatggctgcagcaacatatttatatttaccttatgattgttg |
6587947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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