View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_high_50 (Length: 251)
Name: NF4513_high_50
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_high_50 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 26049822 - 26049582
Alignment:
| Q |
1 |
ttcagtccaatcctccatccgtgtccattcaaaacaccacacttcaccaactctctttttctatattaatcttattatcctcctttcattaggagaataa |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
26049822 |
ttcagtccaatcctccatccgt--ccattcaaaacaccacacttcaccaattctctttttctatattaatcttattatcct---ttcattaggagaaaaa |
26049728 |
T |
|
| Q |
101 |
aaaa--tgagacaaaacaagggtatcaagnnnnnnncattacttgacaacaagttttcacagaagggcaaaacttaccaacagtactatagcctataggt |
198 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
26049727 |
aaaaaatgagacaaaacaagggtatcaagaaaaaaacattacttgacaaccagttttcacagtagggcaaaacttgccaacagtactatagcctataggt |
26049628 |
T |
|
| Q |
199 |
gttgttctctactaaaacttacaataatcataattactctgtgctc |
244 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26049627 |
gttgttctctactaaaacttacaataatcataattactctgtgctc |
26049582 |
T |
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