View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_high_54 (Length: 248)
Name: NF4513_high_54
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_high_54 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 15363366 - 15363541
Alignment:
| Q |
1 |
tagtggcagtgattcatagctttcaccaatatatgccaacacattggaaaagctacaatcttactctaaaaccctaatttgggcatatataaaattctag |
100 |
Q |
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| T |
15363366 |
tagtggcagtgattcatagctttcaccaatatatgccaacacattggaaaagctacaatcttactctaaaaccctaatttgggcatatataaaattttag |
15363465 |
T |
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| Q |
101 |
acagaataaacaatgaagcaaaaagaaaacaccattctcattctcagttcatagtaacaatacaaaacagaacaga |
176 |
Q |
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| T |
15363466 |
acagaataaacaaagaagcaaaaagaaaacaccattctcattctcagttcatagtaacaatacagaacagaacaga |
15363541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 15363242 - 15363310
Alignment:
| Q |
85 |
atatataaaattctagacagaataaacaatgaagcaaaaagaaaacaccattctcattctcagttcatag |
154 |
Q |
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| T |
15363242 |
atatataaaattatagacagaaccagcaat-aagcaaaaatgaaacaccattctcaatcttagttcatag |
15363310 |
T |
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