View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_high_61 (Length: 244)
Name: NF4513_high_61
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_high_61 |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 26454346 - 26454468
Alignment:
| Q |
118 |
taaccaataactcaacaggcaaaggtatgatctttttcaatttcacattcgacaattttctttaacctgggcgttcttcaatatatttaagatcagatcg |
217 |
Q |
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| T |
26454346 |
taaccaataactaaacaggcaaaggtatgatctttttcaatttcactttcgacaattttctttaacctgggcgttcttcaatatatttaagatcagatcg |
26454445 |
T |
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| Q |
218 |
atcgaagtggttttgagtcagtg |
240 |
Q |
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| T |
26454446 |
atcgaagtggttttgtgtcagtg |
26454468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 26454172 - 26454272
Alignment:
| Q |
18 |
ttaaaatagtggtccctacagaatcactcaataaatagtgtgtaagttgtatgttttaccaaaaccgaatacctagccgtgttgttttgtttctttgtcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26454172 |
ttaaaatagtggtccctacagaatcactcaataaatagtgtgtaagttgtatgttttaccaaaaccgaatacctagccgtgttgttttgtttctttatcc |
26454271 |
T |
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| Q |
118 |
t |
118 |
Q |
| |
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| |
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| T |
26454272 |
t |
26454272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 26445968 - 26446048
Alignment:
| Q |
37 |
agaatcactcaataaatagtgtgtaagttgtatgttttaccaaaaccgaatacctagccgtgttgttttgtttctttgtcc |
117 |
Q |
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| T |
26445968 |
agaatcactcaataaatagtgtgcaagttgtatgttttaccaaaacctaatacctaaccatgctattttgtttctttgtcc |
26446048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 26449495 - 26449431
Alignment:
| Q |
118 |
taaccaataactcaacaggcaaaggtatgatctttttcaatttcacattcgacaattttctttaa |
182 |
Q |
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| T |
26449495 |
taaccaataactcaacagacaaatgcatgatctttttcattttcactttcgacaattttctttaa |
26449431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 26446122 - 26446196
Alignment:
| Q |
118 |
taaccaataactcaacaggcaaaggtatgatctttttcaatttcacattcgacaattttctttaacctgggcgtt |
192 |
Q |
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||||||| ||||||| | ||||||||||||| ||||||||||||| |||||||||||| ||||| |||| |||| |
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| T |
26446122 |
taaccaaccactcaactgacaaaggtatgatccttttcaatttcactttcgacaattttatttaatctggccgtt |
26446196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 26446240 - 26446278
Alignment:
| Q |
190 |
gttcttcaatatatttaagatcagatcgatcgaagtggt |
228 |
Q |
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|||||| ||||||||||||||||||||||| |||||||| |
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| T |
26446240 |
gttctttaatatatttaagatcagatcgattgaagtggt |
26446278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 26445897 - 26445934
Alignment:
| Q |
39 |
aatcactcaataaatagtgtgtaagttgtatgttttac |
76 |
Q |
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| T |
26445897 |
aatcactcaatcaatagtgtgcaagttgtatgttttac |
26445934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 29673165 - 29673209
Alignment:
| Q |
74 |
taccaaaaccgaatacctagccgtgttgttttgtttctttgtcct |
118 |
Q |
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| T |
29673165 |
taccaaaacctaattcctagtcgtgttgttttgtttctttgtcct |
29673209 |
T |
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