View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_high_68 (Length: 238)
Name: NF4513_high_68
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_high_68 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 31295057 - 31295277
Alignment:
| Q |
1 |
ccttcaaatcggggctgaactgaaactatttatcgatttttattttctttcctccttattggtggtagatttcaatgttatggacttttgtgtagatgat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| || |
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| T |
31295057 |
ccttcaaatcggggctgaactgaaactatttatcgatttttattttctttcctccttgttggtggtagatttcaatgttatggatttttgtgtagataat |
31295156 |
T |
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| Q |
101 |
attgtgacgcaacttaaaatgattatacgatgcgatatcataacttattccatctcaatgtttgttttgctttgataagtaacttcatattttgtgtttg |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31295157 |
attgtgatgcaacttaaaatgattatacgatgcgatatcatatcttattccacctcaatgtttgttttgctttgataagtaacttcatattttgtgtttg |
31295256 |
T |
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| Q |
201 |
caggaagagcaaaccaatgag |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
31295257 |
caggaagagcaaaccaatgag |
31295277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 42301878 - 42301658
Alignment:
| Q |
1 |
ccttcaaatcggggctgaactgaaactatttatcgatttttattttctttcctccttattggtggtagatttcaatgttatggacttttgtgtagatgat |
100 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
42301878 |
ccttcaactcggggctgaattgaaactatttatcgatttttatttcctttcctccttattggtggtagatttcaatgttatggatttttgtgtagataat |
42301779 |
T |
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| Q |
101 |
attgtgacgcaacttaaaatgattatacgatgcgatatcataacttattccatctcaatgtttgttttgctttgataagtaacttcatattttgtgtttg |
200 |
Q |
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||||| || |||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42301778 |
attgtaacataacttaaaatgattatacgatgtgatatcataacttattccacctcaaagtttgttttgctttgataagtaatttcatattttgtgtttg |
42301679 |
T |
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| Q |
201 |
caggaagagcaaaccaatgag |
221 |
Q |
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|||||||||||||| |||||| |
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| T |
42301678 |
caggaagagcaaacaaatgag |
42301658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2368099 - 2367879
Alignment:
| Q |
1 |
ccttcaaatcggggctgaactgaaactatttatcgatttttattttctttcctccttattggtggtagatttcaatgttatggacttttgtgtagatgat |
100 |
Q |
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|||||||||||||| |||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
2368099 |
ccttcaaatcggggatgaattgaaactatttatcgttttttattttctttcccccttattggtggtagatttcaatgttatggatttttgtgtagataat |
2368000 |
T |
|
| Q |
101 |
attgtgacgcaacttaaaatgattatacgatgcgatatcataacttattccatctcaatgtttgttttgctttgataagtaacttcatattttgtgtttg |
200 |
Q |
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||||| ||| | | |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
2367999 |
attgtaacgtagcataaaattattatacgatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaatttcatattttatgtttg |
2367900 |
T |
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| Q |
201 |
caggaagagcaaaccaatgag |
221 |
Q |
| |
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|| ||||||||||| |||||| |
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| T |
2367899 |
catgaagagcaaacaaatgag |
2367879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 93723 - 93613
Alignment:
| Q |
111 |
aacttaaaatgattatacgatgcgatatcataacttattccatctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagc |
210 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
93723 |
aacttaaaatgattatacaatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaacttgatattttgtgtttgcaggaagagc |
93624 |
T |
|
| Q |
211 |
aaaccaatgag |
221 |
Q |
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|||| |||||| |
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| T |
93623 |
aaacaaatgag |
93613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 22761898 - 22761796
Alignment:
| Q |
119 |
atgattatacgatgcgatatcataacttattccatctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagcaaaccaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
22761898 |
atgattatacgatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaatttcatattttgtgtttgcaggaagagcaaacaaat |
22761799 |
T |
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| Q |
219 |
gag |
221 |
Q |
| |
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||| |
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| T |
22761798 |
gag |
22761796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 119 - 221
Target Start/End: Original strand, 18314373 - 18314475
Alignment:
| Q |
119 |
atgattatacgatgcgatatcataacttattccatctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagcaaaccaat |
218 |
Q |
| |
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||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
18314373 |
atgattatacgatgcaatatcataacttattccacctcaatgtttgttttgctttgataagtaatttcatattttgtgtttgcaggaagagcaaacaaat |
18314472 |
T |
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| Q |
219 |
gag |
221 |
Q |
| |
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||| |
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|
| T |
18314473 |
gag |
18314475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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