View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_high_7 (Length: 543)
Name: NF4513_high_7
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 29 - 533
Target Start/End: Original strand, 45512349 - 45512855
Alignment:
| Q |
29 |
taatcaccgtttgaagaacaacnnnnnnntcttccattctcaatatttgtttttatatgaacatcacttccatttttcctgcaattgtttgatgaaaaaa |
128 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
45512349 |
taatcaccgtttgaagaacaacaaaaaaaccttccattctcaatatttgtttttatatgaacagcacttccatttttcctgcaattgtttgatgaagaaa |
45512448 |
T |
|
| Q |
129 |
taagtatgtccaatttcttaattcgcaatgagacttaccaatcttatcatga----agatcccattctatggtggaacggatacaataccaaaccctacc |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45512449 |
taagtatgtccaatttcttaattcgcaatgagacttaccaatcttatcatgatcgaagatcccattctatggtggaacggatacaataccaaaccctacc |
45512548 |
T |
|
| Q |
225 |
taatttttaagatcaaggaacattgtgtaactatgctagatcctatctaatatcatcaattccattactttgatattattttcttaatttaaatcatctt |
324 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45512549 |
taatttttaagatcaaggaacattgtgtgactatgctagatcctatctaat--catcaattccattactttgatattattttcttaatttaaatcatctt |
45512646 |
T |
|
| Q |
325 |
tcattgggttaattaaatcaaaatttgaatgttggtagaaatcaatatagcaacataattggtgaaagcatacaaacaagatccatgggaatgaagagag |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45512647 |
tcattgggttaattaaatcaaaatttgaatgttggtagaaatcaatatagcaacataattggtgaaagcatacaaacaagatccatgggaatgaagagag |
45512746 |
T |
|
| Q |
425 |
catcgacatgtgacggagaaaagcttaaaccgagggcaaaaatgaattaggaaggtgacgagaccagtgattagaagacaaggatttaaaaattaggaat |
524 |
Q |
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|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45512747 |
caacgacatgtgacggataaaagcttaaaccgagggcaaaaatgaattaggaaggtgacgagaccagtgattagaagacaaggatttaaaaattaggaat |
45512846 |
T |
|
| Q |
525 |
acacctatg |
533 |
Q |
| |
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||||||||| |
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| T |
45512847 |
acacctatg |
45512855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 78 - 195
Target Start/End: Original strand, 35744148 - 35744272
Alignment:
| Q |
78 |
tttttatatgaacatcacttccatttttcc--------tgcaattgtttgatgaaaaaataagtatgtccaatttcttaattcgcaatgagacttaccaa |
169 |
Q |
| |
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|||||| || |||||||||||||||||||| ||| |||| |||||||| ||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
35744148 |
tttttacataaacatcacttccatttttccgtttgaagtgccattgcttgatgaagaaataag-atgtccattttcttaattcgcaatgagacttaccaa |
35744246 |
T |
|
| Q |
170 |
tcttatcatgaagatcccattctatg |
195 |
Q |
| |
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|||| ||||||||||||||||||||| |
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|
| T |
35744247 |
tcttgtcatgaagatcccattctatg |
35744272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 405
Target Start/End: Complemental strand, 29264921 - 29264799
Alignment:
| Q |
282 |
aattccattactttgata-ttattttcttaatttaaatcatctttcattgggttaattaaatcaaaatttgaatgttggtagaaatcaatatagcaacat |
380 |
Q |
| |
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||||||||| ||||||| |||||||||||||| |||| |||||||||| ||||||| ||||||||| || | | | | ||||||||||| ||||| ||| |
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| T |
29264921 |
aattccatttctttgatgcttattttcttaattgaaattatctttcattaggttaatcaaatcaaaa-ttaactttcgttagaaatcaatttagcagcat |
29264823 |
T |
|
| Q |
381 |
aattggtgaaagcatacaaacaaga |
405 |
Q |
| |
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|| |||| ||||||||||||||||| |
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|
| T |
29264822 |
aa-tggtaaaagcatacaaacaaga |
29264799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 29108537 - 29108585
Alignment:
| Q |
300 |
ttattttcttaatttaaatcatctttcattgggttaattaaatcaaaat |
348 |
Q |
| |
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|||||||||||||| |||| |||||||||| ||||||| |||||||||| |
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|
| T |
29108537 |
ttattttcttaattgaaattatctttcattaggttaatcaaatcaaaat |
29108585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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