View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4513_high_73 (Length: 232)

Name: NF4513_high_73
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4513_high_73
NF4513_high_73
[»] chr2 (3 HSPs)
chr2 (44-214)||(27867403-27867576)
chr2 (46-164)||(9501493-9501614)
chr2 (46-194)||(28279331-28279482)
[»] chr8 (1 HSPs)
chr8 (49-214)||(16053359-16053528)
[»] chr6 (1 HSPs)
chr6 (46-202)||(18388530-18388689)
[»] chr3 (4 HSPs)
chr3 (46-202)||(11520034-11520196)
chr3 (46-164)||(14426582-14426704)
chr3 (116-163)||(8403427-8403474)
chr3 (49-91)||(20097655-20097697)
[»] chr4 (3 HSPs)
chr4 (44-214)||(12023719-12023888)
chr4 (44-214)||(12032171-12032339)
chr4 (44-154)||(15788385-15788498)
[»] chr5 (2 HSPs)
chr5 (124-202)||(17026524-17026602)
chr5 (124-174)||(23177119-23177169)
[»] scaffold1429 (1 HSPs)
scaffold1429 (51-91)||(437-477)
[»] chr7 (4 HSPs)
chr7 (99-202)||(25705404-25705506)
chr7 (1-51)||(22810139-22810189)
chr7 (1-51)||(22831526-22831576)
chr7 (1-51)||(22842665-22842715)
[»] chr1 (1 HSPs)
chr1 (53-108)||(18828308-18828364)


Alignment Details
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 214
Target Start/End: Original strand, 27867403 - 27867576
Alignment:
Q  44 aataatgcatggaggctcaaagtggtctcacaaaggatatagcaataa---atcagggtggcttgaaaaaggctataggtaccaaaacaaatatctcgtg 140  Q
    ||||||||| ||||||| ||| |||  |||||||||||||| ||||||   |||| ||| ||||||||||||||  |||||||||||||| | |||||||    
T  27867403 aataatgcaaggaggcttaaattggcttcacaaaggatataacaataataaatcaaggtagcttgaaaaaggcttgaggtaccaaaacaagtgtctcgtg 27867502  T
Q  141 tgtatgacaatataaccgatagtctatagagaacaaccaaaattttgagcaaaaataacaattcacatggaaca 214  Q
    ||||||| |||| |||||||||||  |||||||| ||  |||||| ||| ||||||| |||| |||||||||||    
T  27867503 tgtatgataataaaaccgatagtccgtagagaacgacataaatttcgaggaaaaatagcaatccacatggaaca 27867576  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 164
Target Start/End: Complemental strand, 9501614 - 9501493
Alignment:
Q  46 taatgcatggaggctcaaagtggtctcacaaaggatatagca--ataaatcagggtggcttgaaaaaggctataggtaccaaaa-caaatatctcgtgtg 142  Q
    |||||||||||||||||||||| | ||||| | ||||||  |  | || |||||||||||||||||||||| ||| |||||||| ||||| |||||||||    
T  9501614 taatgcatggaggctcaaagtgatttcacagaagatatataatgacaattcagggtggcttgaaaaaggctctagttaccaaaaacaaatgtctcgtgtg 9501515  T
Q  143 tatgacaatataaccgatagtc 164  Q
    |||||||||| ||| |||||||    
T  9501514 tatgacaatacaactgatagtc 9501493  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 194
Target Start/End: Original strand, 28279331 - 28279482
Alignment:
Q  46 taatgcatggaggctcaaagtggtctcacaaaggatatagca--ataaatcagggtggcttgaaaaaggctataggtaccaaaa-caaatatctcgtgtg 142  Q
    ||||| |||||| |||| |||| | ||||||||||||||  |  |||| ||||| |||||||||||| ||| ||  || ||| | |||||| ||||||||    
T  28279331 taatggatggagactcacagtgatttcacaaaggatatataattataattcaggatggcttgaaaaatgctctatttatcaatatcaaatacctcgtgtg 28279430  T
Q  143 tatgacaatataaccgatagtctatagagaacaaccaaaattttgagcaaaa 194  Q
    |||||||||| ||||||||||| |||||||||  || |||||| ||||||||    
T  28279431 tatgacaatacaaccgatagtccatagagaacttccgaaatttcgagcaaaa 28279482  T

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Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 49 - 214
Target Start/End: Original strand, 16053359 - 16053528
Alignment:
Q  49 tgcatggaggctcaaagtggtctcacaaaggatatagca--ataaatcagggtggcttgaaaaaggctataggtaccaaaacaaatat--ctcgtgtgta 144  Q
    |||||||||||| |||||||| |||||||||||||   |  |||| ||||||||||||||||| |||  ||| |||||||| | | ||  ||||||||||    
T  16053359 tgcatggaggctaaaagtggtttcacaaaggatatgtgatgataattcagggtggcttgaaaa-ggccctagttaccaaaaaataaatgcctcgtgtgta 16053457  T
Q  145 tgacaatataaccgatagtctatagagaacaaccaaaattttgagcaaaaataacaattc-acatggaaca 214  Q
    |||||||||||| |||||||||||||||||  || |||||| |||||||||||||||| | ||||||||||    
T  16053458 tgacaatataactgatagtctatagagaacgtccgaaatttcgagcaaaaataacaatccaacatggaaca 16053528  T

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Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 46 - 202
Target Start/End: Complemental strand, 18388689 - 18388530
Alignment:
Q  46 taatgcatggaggctcaaagtggtctcacaaaggatatagcaataaa--tcagggtggcttgaaaaaggctataggtacc--aaaacaaatatctcgtgt 141  Q
    |||||||||||||||||||||||| |||||||||||| | ||||||   ||  |||||||| ||||||||| |||||||   |||||||||   ||||||    
T  18388689 taatgcatggaggctcaaagtggtttcacaaaggataaa-caataatattctaggtggcttcaaaaaggctctaggtacggaaaaacaaatgcttcgtgt 18388591  T
Q  142 gtatgacaatataaccgatagtctatagagaacaaccaaaattttgagcaaaaataacaat 202  Q
     |||||||||| ||||||||||   |||||||||||||||||||  |||||||||| ||||    
T  18388590 atatgacaataaaaccgatagttcgtagagaacaaccaaaatttcaagcaaaaatagcaat 18388530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 202
Target Start/End: Complemental strand, 11520196 - 11520034
Alignment:
Q  46 taatgcatggaggctcaaagtggtctcacaaaggata-tagcaataaa--tcagggtggcttgaaaaa--ggctataggtaccaaaa-caaatatctcgt 139  Q
    |||||||| ||||||||||||||| |||||| ||||| ||  |||||   ||||||||||||||||||  |||| |||||||||||| ||||| ||||||    
T  11520196 taatgcatagaggctcaaagtggtttcacaacggataataataataatattcagggtggcttgaaaaaaaggctctaggtaccaaaaacaaatgtctcgt 11520097  T
Q  140 gtgtatgacaatataaccgatagtctatagagaacaaccaaaattttgagcaaaaataacaat 202  Q
    ||||||||||||| |||| ||||||| ||  |||  ||| ||||||  |||||||||| ||||    
T  11520096 gtgtatgacaatacaaccaatagtctgtaacgaatgaccgaaatttcaagcaaaaatagcaat 11520034  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 46 - 164
Target Start/End: Complemental strand, 14426704 - 14426582
Alignment:
Q  46 taatgcatggaggctcaaa-gtggtctcacaaaggatatagca--ataaatcagggtggcttgaaaaaggctataggtaccaaaa-caaatatctcgtgt 141  Q
    ||||||||||||||||||| ||||| |||||||||||| |  |  |||| ||||||||| |||||||||||| ||| |||||||| |||||  ||| |||    
T  14426704 taatgcatggaggctcaaaagtggtttcacaaaggataaataatgataattcagggtggattgaaaaaggctctagttaccaaaaacaaatgcctcatgt 14426605  T
Q  142 gtatgacaatataaccgatagtc 164  Q
    ||||||||||||||| |||||||    
T  14426604 gtatgacaatataactgatagtc 14426582  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 8403427 - 8403474
Alignment:
Q  116 taggtaccaaaacaaatatctcgtgtgtatgacaatataaccgatagt 163  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8403427 taggtaccaaaacaaatttctcgtgtgtatgacaatataaccgatagt 8403474  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 20097697 - 20097655
Alignment:
Q  49 tgcatggaggctcaaagtggtctcacaaaggatatagcaataa 91  Q
    ||||||||||||||||||||| |||||||| ||||| ||||||    
T  20097697 tgcatggaggctcaaagtggtttcacaaagtatataccaataa 20097655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 214
Target Start/End: Original strand, 12023719 - 12023888
Alignment:
Q  44 aataatgcatggaggctcaaagtggtctcacaaaggatatagcaataaa---tcagggtggcttgaaaaaggctataggtaccaaaacaaatatctcgtg 140  Q
    |||| ||| |||||||||||| | || ||||||| |||||| ||||||    || |||||||||||||||||||  | |||||||||||| | |||| ||    
T  12023719 aatattgcttggaggctcaaactagtttcacaaatgatataacaataataattccgggtggcttgaaaaaggctcaaagtaccaaaacaagtgtctcatg 12023818  T
Q  141 tgtatgacaatataaccgatagtctatagagaacaaccaaaattttgagcaaaaataacaattcacatggaaca 214  Q
    ||||||| |||||||  |||||||  |||||||||||| |||    ||| ||||||| |||| |||||||||||    
T  12023819 tgtatgataatataattgatagtccgtagagaacaacctaaa----gaggaaaaatagcaatccacatggaaca 12023888  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 214
Target Start/End: Complemental strand, 12032339 - 12032171
Alignment:
Q  44 aataatgcatggaggctcaaagtggtctcacaaaggatatagca--ataaatcagggtggcttgaaaaaggctataggtaccaaaacaaatatctcgtgt 141  Q
    |||| ||| |||||||||||| | || ||||||| ||||||  |  |||| || | |||||||||||||| ||  ||||| |||||||| | |||| |||    
T  12032339 aatattgcttggaggctcaaactagtttcacaaatgatatacaataataattctgagtggcttgaaaaagactcaaggtatcaaaacaagtgtctcatgt 12032240  T
Q  142 gtatgacaatataaccgatagtctatagagaacaaccaaaattttgagcaaaaataacaattcacatggaaca 214  Q
    |||||| |||||||| |||||||  |||||||||||| |||    ||| ||||||| |||| |||||||||||    
T  12032239 gtatgataatataactgatagtccgtagagaacaacctaaa----gaggaaaaatatcaatccacatggaaca 12032171  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 15788385 - 15788498
Alignment:
Q  44 aataatgcatggaggctcaaagtggtctcacaaaggatatagcaataa---atcagggtggcttgaaaaaggctataggtaccaaaacaaatatctcgtg 140  Q
    |||||||||| || |||||||||  | |||||||||||||| ||||||   || |||||||||| || || |||  |||||||||||||| | ||||| |    
T  15788385 aataatgcatagaagctcaaagtaatttcacaaaggatataacaataataaattagggtggcttaaataaagctcaaggtaccaaaacaagtgtctcgcg 15788484  T
Q  141 tgtatgacaatata 154  Q
    ||||||| ||||||    
T  15788485 tgtatgataatata 15788498  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 17026602 - 17026524
Alignment:
Q  124 aaaacaaatatctcgtgtgtatgacaatataaccgatagtctatagagaacaaccaaaattttgagcaaaaataacaat 202  Q
    ||||||||| ||||||||||||||||||| || ||||||||| ||  |||| |||||||||| ||||||||||| ||||    
T  17026602 aaaacaaatgtctcgtgtgtatgacaatacaaacgatagtctgtaatgaacgaccaaaatttcgagcaaaaatagcaat 17026524  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 23177119 - 23177169
Alignment:
Q  124 aaaacaaatatctcgtgtgtatgacaatataaccgatagtctatagagaac 174  Q
    ||||||||||||||||||||||||||||| ||| |||||||  ||||||||    
T  23177119 aaaacaaatatctcgtgtgtatgacaatacaactgatagtccgtagagaac 23177169  T

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Target: scaffold1429 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1429
Description:

Target: scaffold1429; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 437 - 477
Alignment:
Q  51 catggaggctcaaagtggtctcacaaaggatatagcaataa 91  Q
    ||||||||||||||||||| |||||||||||||| ||||||    
T  437 catggaggctcaaagtggtttcacaaaggatataacaataa 477  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 202
Target Start/End: Complemental strand, 25705506 - 25705404
Alignment:
Q  99 tggcttgaaaaaggctataggtaccaaaacaaatatctcgtgtgtatgacaatataaccgatagtctatagagaacaaccaaaattttgagcaaaaataa 198  Q
    |||||| ||||||||   ||||||||||  |||| ||||||||||||||  ||| |||| ||||||| || |||||||||| | |||  |||||||||||    
T  25705506 tggcttaaaaaaggcacaaggtaccaaag-aaatgtctcgtgtgtatgatgatacaaccaatagtctgtatagaacaaccacactttgtagcaaaaataa 25705408  T
Q  199 caat 202  Q
    ||||    
T  25705407 caat 25705404  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 22810139 - 22810189
Alignment:
Q  1 acataaacacaaggtggtggaacatgattattgtttgtgaaggaataatgc 51  Q
    ||||||||||||| | | ||||||||||||| ||||||||| |||||||||    
T  22810139 acataaacacaagcttgaggaacatgattatagtttgtgaatgaataatgc 22810189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 22831526 - 22831576
Alignment:
Q  1 acataaacacaaggtggtggaacatgattattgtttgtgaaggaataatgc 51  Q
    ||||||||||||| | | ||||||||||||| ||||||||| |||||||||    
T  22831526 acataaacacaagcttgaggaacatgattatagtttgtgaatgaataatgc 22831576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 22842665 - 22842715
Alignment:
Q  1 acataaacacaaggtggtggaacatgattattgtttgtgaaggaataatgc 51  Q
    ||||||||||||| | | ||||||||||||||||||||||| ||| |||||    
T  22842665 acataaacacaagcttgaggaacatgattattgtttgtgaatgaacaatgc 22842715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 18828308 - 18828364
Alignment:
Q  53 tggaggctcaaagtggtctcacaaaggat-atagcaataaatcagggtggcttgaaa 108  Q
    ||||||||||||||||| ||||||||||| |||  |||| | |||||||||||||||    
T  18828308 tggaggctcaaagtggtttcacaaaggataataagaatataacagggtggcttgaaa 18828364  T

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