View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4513_high_75 (Length: 227)
Name: NF4513_high_75
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_high_75 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 77 - 227
Target Start/End: Complemental strand, 4152926 - 4152776
Alignment:
| Q |
77 |
atatacctgacaatcaaaagtgccatcaggtttaatcccagcatttccccaaggaaccattctaagatccacaatggaaatgagaccagtttggaagagc |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4152926 |
atatacctgacaatcaaaagtgccatcaggtttaatcccagcatttccccaaggaaccattctaagatccacaatggaaatgagaccagtttggaagagc |
4152827 |
T |
|
| Q |
177 |
cttacaagatcgttcactataaaataagcacaaaaaggacatagactttca |
227 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4152826 |
cttacaagatcgttcactataaaatcagcacaaaaaggacatagactttca |
4152776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 78 - 227
Target Start/End: Complemental strand, 4160125 - 4159976
Alignment:
| Q |
78 |
tatacctgacaatcaaaagtgccatcaggtttaatcccagcatttccccaaggaaccattctaagatccacaatggaaatgagaccagtttggaagagcc |
177 |
Q |
| |
|
|||||||||||| |||||||||||| || | ||||| ||||||||||||||| |||||| |||||| |||||| ||||||||| ||||| |||||| |
|
|
| T |
4160125 |
tatacctgacaaacaaaagtgccattagttgcaatcctagcatttccccaagggaccattttaagattcacaattgaaatgagattggtttgaaagagct |
4160026 |
T |
|
| Q |
178 |
ttacaagatcgttcactataaaataagcacaaaaaggacatagactttca |
227 |
Q |
| |
|
| ||||||| ||||||||| |||| |||| || |||| |||||||||||| |
|
|
| T |
4160025 |
tcacaagatggttcactatgaaatcagcagaataagggcatagactttca |
4159976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University