View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_1 (Length: 1099)
Name: NF4513_low_1
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 497; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 17 - 685
Target Start/End: Original strand, 5717024 - 5717689
Alignment:
| Q |
17 |
aaatagaataatcaaacttaattatacatttcagtatcgtgttggtgtcaaatactgatatatgttggatacagaacacatc-ttaatttgaagtgtg-- |
113 |
Q |
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|||||||||||||||| |||||||||||| | || |||| || |||||| ||| ||||||||||| || | ||||| ||| |||||||||||||| |
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| T |
5717024 |
aaatagaataatcaaatttaattatacatgtttgtgtcgtattagtgtcagatattgatatatgttagacattgaacatatccttaatttgaagtgtcaa |
5717123 |
T |
|
| Q |
114 |
taatacatatcttataggttggaacatagtagattatttacaaataaaacagggttacatgttctatatatttgtactgcttatgatgacttgtcttgtc |
213 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5717124 |
taatatatatcttataggttggaacatggtagattatttacaaataaaacagggttacttgttctatatatttgtactgcttatgatgacttgtcttgtc |
5717223 |
T |
|
| Q |
214 |
atgattcagttaataatgacaacaaaaaccaaagctagttctctggtaaaacgtggacaaaagagaaacactcttttctatctttgtattttacacaaaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5717224 |
atgattcagttaataatgacaacaaaaaccaaagctagttctctggtaaaacgtggacaaaagagaaacactcttttctatctttgtattttacacaaaa |
5717323 |
T |
|
| Q |
314 |
tatnnnnnnnngaaaagagactcaccttctattgtttttatatgaatgtgtgtgaccatttaatttatgatttcatttattccttttaggtcatgtttac |
413 |
Q |
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||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
5717324 |
tataaa------aaaagggactcactttctattgtttttatatgaatgtgtgtgaccatttaatttatgatttcattgattccttttaggtcatgtgtac |
5717417 |
T |
|
| Q |
414 |
cctcatgtttttatgtcacttatacagcctaaaacttgctattgctttgctgtttacatttgtgtcccatatttacaaagttgtcactgcaacaacaatg |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5717418 |
cctcatgtttttatgtcacttatacagcctaaaacttgctattgctttgctgtttacatttgtgtcccatatttacaaagttgtcactgcaacaacaatg |
5717517 |
T |
|
| Q |
514 |
cttttattgcttctagatgtcatttgttttaaaccttaccttctttccatcaaagcataccacattcgtgcttcatagctattttggcaacaaacacgtt |
613 |
Q |
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||||||||| |||||| |||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
5717518 |
cttttattgattctagttgtcatttgtgttaaaccttaccttctttccagcaaagcataccccattcgtgcttcatagctattttggcagcaaacacgtg |
5717617 |
T |
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| Q |
614 |
catccacaatatcattattaccatgttcttcaaacaaaaatcactttctttcttgtgctatattatcgtgaa |
685 |
Q |
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| T |
5717618 |
catccacaatatcattattaccatgttcttcatacaaaaatcactttctttcttgtgctatattatcttgaa |
5717689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 727 - 1093
Target Start/End: Original strand, 5717715 - 5718081
Alignment:
| Q |
727 |
atgtcaactagtatatttagtgtatatttggttctgcggtaataaaagttgattttaattgaatgtaacgtgaatgcgaagtggaaaaacaatagtgaga |
826 |
Q |
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| T |
5717715 |
atgtcaactagtatatttagtgtatatttggttctgcggtaataaaagttcattttaattgaacgtaacgtgaatgcgaagtggaaaaacaacagtgaga |
5717814 |
T |
|
| Q |
827 |
ctgtgattttgttgaagctttaaaatgtaacttttattaaaatcgcggtagttcattttgattccatcaatctcactgcaaatccaatcatgacaaatta |
926 |
Q |
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| T |
5717815 |
ctgtgattttgttgaagctttaaaatgtaacttttatcaaaatcgcggcagttcattttgattccatcaatctcactacaaatccaatcatgacaaatta |
5717914 |
T |
|
| Q |
927 |
tagaagtatataatgattgaactcaacattgtttgttattgcagcagttaactttttcttaaattacttgatattataattttggaatttcacactttat |
1026 |
Q |
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| T |
5717915 |
tagaagtatataatgattgaactcaacattgtttgttattgcagcagttaactttttcttaaattacttgatattataattttggaatttcacactttat |
5718014 |
T |
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| Q |
1027 |
gatttgcaggatgcttttactataatgtttttgttttaccttaatttagtgtttctttctacctatg |
1093 |
Q |
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| T |
5718015 |
gatttgcagcatatttttactataatgtttttgttttaccttaatttagtgtttctttctacctatg |
5718081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 826 - 861
Target Start/End: Complemental strand, 23955569 - 23955534
Alignment:
| Q |
826 |
actgtgattttgttgaagctttaaaatgtaactttt |
861 |
Q |
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| T |
23955569 |
actgtgattttgttgaagctttaaaatgtaactttt |
23955534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 830 - 868
Target Start/End: Complemental strand, 13712362 - 13712324
Alignment:
| Q |
830 |
tgattttgttgaagctttaaaatgtaacttttattaaaa |
868 |
Q |
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|||||||||||||||| ||||||||||||||||| |||| |
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| T |
13712362 |
tgattttgttgaagctctaaaatgtaacttttatcaaaa |
13712324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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