View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_12 (Length: 496)
Name: NF4513_low_12
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 11 - 483
Target Start/End: Original strand, 42038893 - 42039372
Alignment:
| Q |
11 |
atcatcataatatcatattagtattaatttaacatatagaatgtgattgattgtgcagcttactttgttgatggctatgatattggcaagttcacaatga |
110 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42038893 |
atcataataatatcatattagtattaatttaacatatagaatgtgattgattgtgcagcgtactttgttgatggctatgatattggcaagttcacaatga |
42038992 |
T |
|
| Q |
111 |
aggttgttgatgatgaaagaacaatcaacaaaagtgttcattttcgaccctctaccaactgttacagcatgaatgagcttgcttctttgtgggaaaataa |
210 |
Q |
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| T |
42038993 |
aggttgttgatgatgaaagaacaatcaacaaaagtgttcattttcgaccctctaccaactgttacagcatgaatgagcttgcttctttgtgggaaaataa |
42039092 |
T |
|
| Q |
211 |
aattgctcaaaaaattcctagagcaatcatatctggagacgatcttctaggaatagccgcaggttccatcctactcttaatannnnnnnatattctaaag |
310 |
Q |
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|||||||| ||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42039093 |
aattgctcgaaaaattcctagagcaatcgtctctgaagacgatcttctaggaatagccgcaggttccatcctactcttaatatttttttatattctaaag |
42039192 |
T |
|
| Q |
311 |
tgacaaataatacgaatcaataaaatatttcataacaaattttgatacaatgtttgttcatttctctaagagtttggctaattggaagtgaatgagtatt |
410 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42039193 |
tgacaaataaaacgaatcaataaaatatttcataacaaattttgatacaatgtttgttcatttctctaagagtttggctaattggaagtgaacgagtatt |
42039292 |
T |
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| Q |
411 |
aa-------ttttgactatatgttaatgcagaaaattgtataccagaaagtgttgtggcatcaatcacccatgatatatt |
483 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42039293 |
aattttgatttttgactatatgttaatgcagaaaattgtataccagaaagtgttgtggcatcaatcacccatgatatatt |
42039372 |
T |
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