View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_14 (Length: 488)
Name: NF4513_low_14
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 35789240 - 35788812
Alignment:
| Q |
1 |
aactaatgagtatcagatgaatagtggaagaagaagaagaaatggaggaagagga------------tggaggggaaattatccttatgtcgacaaggta |
88 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35789240 |
aactaatgagtatcagatgaatagtggaagaagaagaagaaatggaggaagaggaggagggagaggatggaggggaaattatccttatgtcgacaaggta |
35789141 |
T |
|
| Q |
89 |
gctactccttgtgcatggtgaatgaatatcaaatgccttggactgcatgaaagctaggacacgtatgaagcttaggatataagttatgttatctaggta- |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35789140 |
gctactccttgtgcatggtgaatgaatatcaaatgccttggactacaagaaagctaggacacgtatgaagcttaggatataagttatgttatctaggtat |
35789041 |
T |
|
| Q |
188 |
--ttatatatgtgatgttatattagatacctttgtggtgatcgatgatacaatgtatatattagttctgctattattgaaatatgaatatgcaactacaa |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35789040 |
tattatatatgtgatgttatattagatacctttgtggtgatcgatgatacaatgtatatattagttatgctattattgaaatatgaatatgcaactacaa |
35788941 |
T |
|
| Q |
286 |
ttaaatgatgctatattg-tttgattcttgtcttcttgattatctttgctcctttgtgcatacattaattcatacctggnnnnnnnnntactaatctata |
384 |
Q |
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||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35788940 |
ttaaatgatgctacattgttttgattcttatcttcttgattatctttgctcctttgtgcatacattaattcatacctggaaaaaaaaatactaatctata |
35788841 |
T |
|
| Q |
385 |
tagtaacttctaatgagttcttatttgtt |
413 |
Q |
| |
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| T |
35788840 |
tagtaacttctaatgagttcttatttgtt |
35788812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 245 - 409
Target Start/End: Complemental strand, 35798529 - 35798371
Alignment:
| Q |
245 |
attagttctgctattattgaaatatgaatatgcaactacaattaaatgatgctatattgtttgattcttgtcttcttgattatctttgctcctttgtgca |
344 |
Q |
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|||||| ||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35798529 |
attagtactgatattattgaaatatgaatatgaaactacaattaaatgatgttatattgtttgattcttgtcttcttgattatctttgttcctttgtgca |
35798430 |
T |
|
| Q |
345 |
tacattaattcatacctggnnnnnnnnntactaatctatatagtaacttctaatgagttcttatt |
409 |
Q |
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||| |||||||||||| || ||||||||||||||||| |||||||||||||||| |
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| T |
35798429 |
tac----attcatacctgg--aaaaaaataataatctatatagtaactcctaatgagttcttatt |
35798371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 35760373 - 35760281
Alignment:
| Q |
45 |
gaggaagaggatggaggggaaattatccttatgtcgacaaggtagctactccttgtgcatggtgaatgaatatcaaatgccttggactgcatg |
137 |
Q |
| |
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| T |
35760373 |
gaggaggaggaaggaggggaaatttttcttatgtggaaaaggtagctactcctggtgcatggtaaatgaagatcaagggccttggactgcatg |
35760281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 51 - 141
Target Start/End: Complemental strand, 35765871 - 35765781
Alignment:
| Q |
51 |
gaggatggaggggaaattatccttatgtcgacaaggtagctactccttgtgcatggtgaatgaatatcaaatgccttggactgcatgaaag |
141 |
Q |
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||||| |||||||||||| | |||||| ||||||||| |||||||| ||||||||| |||||| |||| |||| |||||||||| ||||| |
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| T |
35765871 |
gaggaaggaggggaaattttgcttatgcagacaaggtaactactcctagtgcatggtaaatgaagatcagatgctttggactgcaagaaag |
35765781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 35798680 - 35798635
Alignment:
| Q |
162 |
aggatataagttatgttatctaggtattatatatgtgatgttatat |
207 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35798680 |
aggatataagttatgttttctaggtattatatatgtgatgttatat |
35798635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 35798867 - 35798817
Alignment:
| Q |
2 |
actaatgagtatcagatgaatagtggaagaagaagaagaaatggaggaagagga |
55 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
35798867 |
actaatgagtatcagatgaatagaggaagaaga---agaaatggaggaagagga |
35798817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 245 - 317
Target Start/End: Complemental strand, 35760078 - 35760005
Alignment:
| Q |
245 |
attagttctgctattattgaaatatgaa-tatgcaactacaattaaatgatgctatattgtttgattcttgtct |
317 |
Q |
| |
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|||||| ||| |||||||||||||| || ||||||| ||||||||||||| |||| | ||||| |||||||||| |
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| T |
35760078 |
attagtactggtattattgaaatataaaatatgcaattacaattaaatgaagctaaactgttttattcttgtct |
35760005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 469
Target Start/End: Complemental strand, 35788827 - 35788787
Alignment:
| Q |
429 |
tgagttcttatttgttatatttctaaaccgatagatcagtt |
469 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
35788827 |
tgagttcttatttgttatatttctaaatcgataaatcagtt |
35788787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 35785347 - 35785293
Alignment:
| Q |
81 |
acaaggtagctactccttgtgcatggtgaatgaatatcaaatgccttggactgca |
135 |
Q |
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|
||||||||||||||||| |||||||| |||||| ||||||| ||||| |||||| |
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| T |
35785347 |
acaaggtagctactcctactgcatggtaaatgaagatcaaataccttgtactgca |
35785293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 35760431 - 35760394
Alignment:
| Q |
2 |
actaatgagtatcagatgaatagtggaagaagaagaag |
39 |
Q |
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|||||||| |||||||||||||| |||||||||||||| |
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| T |
35760431 |
actaatgaatatcagatgaatagaggaagaagaagaag |
35760394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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