View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4513_low_15 (Length: 486)
Name: NF4513_low_15
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 10385830 - 10386234
Alignment:
| Q |
1 |
actacaatgaatcaccataatatgtcatccaaaaataggggtaagtaaaggtttttcatctttactggggaagaactggtaatctatctaaacatttgta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10385830 |
actacaatgaatcaccataatatgtcatccaaaaacaggggtaagtaaaggtttttcatctttactggggaagaactggtaatctatctaaacatttgta |
10385929 |
T |
|
| Q |
101 |
ctttcaattttattcaagtatagagtcagaaagagtaaaatatgcaagcagagtaggtaattccaccaaatcacaacttatttaagcttactgtaaaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10385930 |
ctttcaattttattcaagtatagagtcagaaagagtaaaatatgcaagcagagtaggtaattccaccaaatcacaacttatttaagcttactgtaaaaga |
10386029 |
T |
|
| Q |
201 |
gagagtacactgacaataggaaataatagtatgtgttttgaaaactttgaannnnnnnattgtcgtcttcccttatctactttagaaacagataacaaca |
300 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10386030 |
gagagtacattgacaataggaaataatagtatgtgttttgaaaactttgaatttttttactgtcgtcttcccttatctactttagaaacaaataacaaca |
10386129 |
T |
|
| Q |
301 |
caatttaaccacaaaaaacacttggcgcaatttcgttcagtgcatttaatc-aaacatagtt-nnnnnnnctaagtttacttaaaatcaaacatagtttc |
398 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10386130 |
caatttaaccaaaaaaaacacttggcgcaatttcgttcagtgcatttaatcaaaacatagttaaaaaaaactaagtttacttaaaatcaaacatagtttc |
10386229 |
T |
|
| Q |
399 |
aaata |
403 |
Q |
| |
|
||||| |
|
|
| T |
10386230 |
aaata |
10386234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 313 - 476
Target Start/End: Original strand, 10386238 - 10386394
Alignment:
| Q |
313 |
aaaaaacacttggcgcaatttcgttcagtgcatttaatcaaacatagttnnnnnnn--ctaagtttacttaaaatcaaacatagtttcaaatatggttgt |
410 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10386238 |
aaaaaacccttggcgcaatttcattcagtgcatttaatcaaacataattaaaaaaaaactaagtttacttaaaatcaaacatagtttcaaatatggttgt |
10386337 |
T |
|
| Q |
411 |
agaaatttttaatcaaatggcgtttcatattgactgtgaagtttggggttgagttttatacctatg |
476 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10386338 |
agaaatttttaatca--------ttcatattgac-gtgaagtttggggttgagttttatacctatg |
10386394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University