View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_19 (Length: 441)
Name: NF4513_low_19
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 23 - 431
Target Start/End: Original strand, 31999151 - 31999559
Alignment:
| Q |
23 |
gagagtgtctattaaactggtctacaaccaacttgagtccatgnnnnnnntgacatgattgaaactcaactccacaatccattctattccaaagccgcaa |
122 |
Q |
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| T |
31999151 |
gagagtgtctattaaactggtctacaaccaacttgagtccatgaaaaaaatgacatgattgaaactcaactccacaatcccttctattccaaagccgcaa |
31999250 |
T |
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| Q |
123 |
gacgatttttaaatgttaatacactaaataccatctatcaaaagaggtctataacagaattgacttttaattaatacctacaaactttttcactaacctg |
222 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31999251 |
gacgatttttaaatgttaatacactatataccatctatcaaaagaggtctataacagaattgacttttaattaatacctacaaactttttcactaacctg |
31999350 |
T |
|
| Q |
223 |
ccccacattttacaaaagtctaaaactgactcccgtgaaaggtctgaccgaattgccaattagctggtgccacgttgtagcttgtcacagttctaccatc |
322 |
Q |
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| T |
31999351 |
ccccacattttacgaaagtctaaaactgactcccgtgaaaggtctgaccgaattgccaattagctggtgccacgttgtagcttgtcacagttctaccatc |
31999450 |
T |
|
| Q |
323 |
accagtggttactttaaaagagaggctttgtccattaaggtaggaattgctctgccagttttggccccaatttcttgacatgggttgccagctagttttg |
422 |
Q |
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| T |
31999451 |
accagtggttactttaaaagagaggctttgtccattaaggtaggaattgctctgccagttttggccccaatttcttgacatgggttgccagctagttttg |
31999550 |
T |
|
| Q |
423 |
gaccctttg |
431 |
Q |
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| T |
31999551 |
gaccctttg |
31999559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 258 - 431
Target Start/End: Original strand, 27487973 - 27488146
Alignment:
| Q |
258 |
tgaaaggtctgaccgaattgccaattagctggtgccacgttgtagcttgtcacagttctaccatcaccagtggttactttaaaagagaggctttgtccat |
357 |
Q |
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| T |
27487973 |
tgaaaggtttgaccaaattgccaatttgctggtgccacattgaaacttgtcatagttctaccatcacttgttgtaacttgaaatgagagggattgtccat |
27488072 |
T |
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| Q |
358 |
taaggtaggaattgctctgccagttttggccccaatttcttgacatgggttgccagctagttttggaccctttg |
431 |
Q |
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| T |
27488073 |
taagataagagttgctttgccaattttgaccccaatttcttgacattggttgccatccagttcttgaccctttg |
27488146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 267 - 431
Target Start/End: Original strand, 27476724 - 27476888
Alignment:
| Q |
267 |
tgaccgaattgccaattagctggtgccacgttgtagcttgtcacagttctaccatcaccagtggttactttaaaagagaggctttgtccattaaggtagg |
366 |
Q |
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| T |
27476724 |
tgaccaaattgccaatttgctggagccacattgaaactggtcatagttctaccatcacttgttgtaacttgaaatgagagggattgtccattaagataag |
27476823 |
T |
|
| Q |
367 |
aattgctctgccagttttggccccaatttcttgacatgggttgccagctagttttggaccctttg |
431 |
Q |
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| T |
27476824 |
agttgctttgccaattttggccccaatttcttgacattggttgccaaccagttcttgaccctttg |
27476888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 11592972 - 11592875
Alignment:
| Q |
333 |
actttaaaagagaggctttgtccattaaggtaggaattgctctgccagttttggccccaatttcttgacatgggttgccagctagttttggacccttt |
430 |
Q |
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| T |
11592972 |
actttgaaggagagactttgtccatcaaggttagagttgctttgccaattttggccccaatttctagacattggttgccaattagtttttgaaccttt |
11592875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 2866212 - 2866281
Alignment:
| Q |
348 |
ctttgtccattaaggtaggaattgctctgccagttttggccccaatttcttgacatgggttgccagctag |
417 |
Q |
| |
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| T |
2866212 |
ctttgtccattaaggtaagagttactttgccaattttgcccccaattccttgacatggcttgccatctag |
2866281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 418
Target Start/End: Original strand, 3803415 - 3803516
Alignment:
| Q |
317 |
accatcaccagtggttactttaaaagagaggctttgtccattaaggtaggaattgctctgccagttttggccccaatttcttgacatgggttgccagcta |
416 |
Q |
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| T |
3803415 |
accattaccagtggtgactacaaatgaaagactttgtccattcaaataagagttgctctgccaattttgtccccaattccttgacatggcttgccatcta |
3803514 |
T |
|
| Q |
417 |
gt |
418 |
Q |
| |
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|| |
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|
| T |
3803515 |
gt |
3803516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 418
Target Start/End: Original strand, 3814084 - 3814185
Alignment:
| Q |
317 |
accatcaccagtggttactttaaaagagaggctttgtccattaaggtaggaattgctctgccagttttggccccaatttcttgacatgggttgccagcta |
416 |
Q |
| |
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||||| ||||||||| ||| ||| || || ||||||||||| | || || ||||||||||| ||||| |||||||| |||||||||| |||||| ||| |
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| T |
3814084 |
accattaccagtggtgactacaaatgaaagactttgtccattcaaataagagttgctctgccaattttgtccccaattccttgacatggcttgccatcta |
3814183 |
T |
|
| Q |
417 |
gt |
418 |
Q |
| |
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|| |
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|
| T |
3814184 |
gt |
3814185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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