View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_2 (Length: 738)
Name: NF4513_low_2
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 639; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 77 - 727
Target Start/End: Complemental strand, 42289846 - 42289196
Alignment:
| Q |
77 |
gtttgaaacaaagtttactacttaattaatgaataattcacatgtaactaacaagcaatatttccctaaattaataaatttctcaccccaatcttcattg |
176 |
Q |
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| T |
42289846 |
gtttgaaacaaagtttactacttaattaatgaataattcacatgtaactaacaagcaatatttccttaaattaataaatttctcaccccaatcttcattg |
42289747 |
T |
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| Q |
177 |
caagatattcgagcttccaaaatgttgacttgaatgtgctgattttaggtcatgattcaaagaaaccatactagtattcatcatgtcacgttgttgttca |
276 |
Q |
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| T |
42289746 |
caagatatttgagcttccaaaatgttgacttgaatgtgctgattttaggtcatgattcaaagaaaccatactagtattcatcatgtcacgttgttgttca |
42289647 |
T |
|
| Q |
277 |
ctttgtgaaaatccaccactcatatttctgaccattcctccaacaccaagaaaatctaaagttaacttatcagatccaccaaatctcatattaaggttgc |
376 |
Q |
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| T |
42289646 |
ctttgtgaaaatccaccactcatatttctgaccattcctccaacaccaagaaaatctaaagttaacttatcagatccaccaaatctcatattaagattgc |
42289547 |
T |
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| Q |
377 |
tttcattgccaaatatggatgatgtgtttccatttgcaatagagtttatcaatccatgaagatcgttgttgtcatgatcattttcaatacttgaacttct |
476 |
Q |
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| T |
42289546 |
tttcattgccaaatatggatgatgtgtttccatttgcaatagagtttatcaatccatgaagatcgttgttgtcatgatcattttcaatacttgaacttct |
42289447 |
T |
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| Q |
477 |
atttccaaaagtggcattgatgttgttgtgatcagacacaacaaagtccctatcacctgatttatgatcattattactacctttgttattgttggtagaa |
576 |
Q |
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| T |
42289446 |
atttccaaaagtggcattgatgttgttgtgatcagacacaacaaagtccctatcacctgatttatgatcattattactacctttgttattgttggtagaa |
42289347 |
T |
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| Q |
577 |
ttagttgaaccaatctgagaagctttttgaagcaatgcagtggcagacatgtgaggactagacatgttttgaccatgttgcattgaattgacaaaaccaa |
676 |
Q |
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| T |
42289346 |
ttagttgaaccaatctgagaagctttttgaagcaatgcagtggcagacatgtgaggactagacatgttttgaccatgttgcattgaattgacaaaaccaa |
42289247 |
T |
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| Q |
677 |
cttgatgatcacttaaagagctattgttgttaatgtaaagtgttgttcctt |
727 |
Q |
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| T |
42289246 |
cttgatgatcacttaaagagctattgttgttaatgtaaagtgttgttcctt |
42289196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 296 - 359
Target Start/End: Original strand, 12801113 - 12801176
Alignment:
| Q |
296 |
tcatatttctgaccattcctccaacaccaagaaaatctaaagttaacttatcagatccaccaaa |
359 |
Q |
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| T |
12801113 |
tcatatttctcaccattcctccaacaccaagaaaatccaaagtcaatttatctgatcctccaaa |
12801176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 42289906 - 42289868
Alignment:
| Q |
17 |
acctcattttaccaatgaactacacttcttttgaggaaa |
55 |
Q |
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| T |
42289906 |
acctcattttaccaatgaactgcacttcttttgaggaaa |
42289868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 580 - 629
Target Start/End: Original strand, 12801370 - 12801419
Alignment:
| Q |
580 |
gttgaaccaatctgagaagctttttgaagcaatgcagtggcagacatgtg |
629 |
Q |
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| T |
12801370 |
gttgaaccaatttgagcagctttttgaagcaatgcagttgccgacatgtg |
12801419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 579 - 633
Target Start/End: Complemental strand, 12777616 - 12777562
Alignment:
| Q |
579 |
agttgaaccaatctgagaagctttttgaagcaatgcagtggcagacatgtgagga |
633 |
Q |
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| T |
12777616 |
agttgcacccatttgagaagctttttgaagcaaagcagttgctgacatgtgagga |
12777562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 579 - 632
Target Start/End: Complemental strand, 36990901 - 36990848
Alignment:
| Q |
579 |
agttgaaccaatctgagaagctttttgaagcaatgcagtggcagacatgtgagg |
632 |
Q |
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| T |
36990901 |
agttgcacccatttgagcagctttttgtagcaatgcagtggctgacatgtgagg |
36990848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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