View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4513_low_22 (Length: 429)

Name: NF4513_low_22
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4513_low_22
NF4513_low_22
[»] chr2 (26 HSPs)
chr2 (1-90)||(12268187-12268276)
chr2 (277-414)||(12268283-12268420)
chr2 (84-149)||(1777462-1777527)
chr2 (82-149)||(25979252-25979319)
chr2 (93-149)||(2412429-2412485)
chr2 (93-149)||(23861754-23861810)
chr2 (91-139)||(23863061-23863109)
chr2 (93-149)||(25977872-25977928)
chr2 (93-145)||(25282409-25282461)
chr2 (94-137)||(24754171-24754214)
chr2 (94-149)||(36837779-36837834)
chr2 (93-149)||(3924867-3924923)
chr2 (93-141)||(11087051-11087099)
chr2 (93-149)||(11088681-11088737)
chr2 (93-149)||(19604920-19604976)
chr2 (93-149)||(30843646-30843702)
chr2 (83-149)||(8809588-8809655)
chr2 (81-123)||(24358913-24358955)
chr2 (89-146)||(1137979-1138036)
chr2 (93-149)||(20245306-20245363)
chr2 (90-123)||(29182410-29182443)
chr2 (93-146)||(29794321-29794373)
chr2 (93-141)||(1778799-1778847)
chr2 (93-149)||(4038844-4038900)
chr2 (83-127)||(12068368-12068412)
chr2 (93-149)||(25283273-25283329)
[»] chr3 (40 HSPs)
chr3 (81-149)||(52401007-52401075)
chr3 (93-149)||(4705683-4705739)
chr3 (93-149)||(20489359-20489415)
chr3 (93-149)||(45267307-45267363)
chr3 (93-149)||(48035733-48035789)
chr3 (93-149)||(52403125-52403181)
chr3 (90-149)||(20488365-20488424)
chr3 (93-146)||(20585648-20585701)
chr3 (93-149)||(39820605-39820661)
chr3 (93-141)||(42446528-42446576)
chr3 (93-149)||(45268571-45268627)
chr3 (93-149)||(53121304-53121360)
chr3 (93-149)||(32637189-32637245)
chr3 (93-141)||(38505588-38505636)
chr3 (93-141)||(40476223-40476271)
chr3 (94-142)||(42444040-42444088)
chr3 (93-141)||(46026078-46026126)
chr3 (93-149)||(48033060-48033116)
chr3 (93-141)||(52708626-52708674)
chr3 (83-141)||(9855170-9855228)
chr3 (87-141)||(40477383-40477437)
chr3 (96-141)||(977855-977900)
chr3 (93-149)||(3416497-3416553)
chr3 (93-149)||(42447788-42447844)
chr3 (93-149)||(46104345-46104401)
chr3 (93-149)||(47433810-47433866)
chr3 (93-141)||(54437476-54437524)
chr3 (94-141)||(22508738-22508785)
chr3 (87-149)||(39819308-39819370)
chr3 (83-137)||(41780821-41780875)
chr3 (93-143)||(44507806-44507856)
chr3 (84-129)||(3417813-3417858)
chr3 (84-141)||(51004135-51004192)
chr3 (93-149)||(976782-976838)
chr3 (93-137)||(15782217-15782261)
chr3 (93-149)||(32635596-32635652)
chr3 (93-149)||(43641145-43641201)
chr3 (87-123)||(44802516-44802552)
chr3 (93-149)||(46027418-46027474)
chr3 (94-146)||(52707539-52707591)
[»] chr7 (36 HSPs)
chr7 (82-149)||(41693636-41693703)
chr7 (93-149)||(35212070-35212126)
chr7 (87-149)||(24195603-24195665)
chr7 (93-149)||(17066427-17066483)
chr7 (93-149)||(41694956-41695012)
chr7 (94-149)||(43066004-43066059)
chr7 (93-143)||(39619798-39619848)
chr7 (87-149)||(42254954-42255016)
chr7 (93-149)||(13418952-13419008)
chr7 (93-149)||(24197104-24197160)
chr7 (93-141)||(31489944-31489992)
chr7 (93-149)||(31848145-31848201)
chr7 (94-149)||(12385708-12385763)
chr7 (94-141)||(38742184-38742231)
chr7 (93-138)||(5611519-5611564)
chr7 (81-149)||(28462629-28462697)
chr7 (93-141)||(31853550-31853598)
chr7 (93-141)||(32197918-32197966)
chr7 (93-141)||(36748200-36748247)
chr7 (94-149)||(11217072-11217127)
chr7 (88-123)||(28263039-28263074)
chr7 (94-141)||(32544783-32544830)
chr7 (73-123)||(8555767-8555817)
chr7 (83-141)||(36749256-36749314)
chr7 (88-141)||(554242-554295)
chr7 (93-146)||(32196686-32196739)
chr7 (96-149)||(39618661-39618713)
chr7 (94-138)||(5610159-5610203)
chr7 (93-149)||(12933421-12933477)
chr7 (93-141)||(25046249-25046297)
chr7 (83-123)||(25988717-25988757)
chr7 (87-123)||(34878093-34878129)
chr7 (93-141)||(40576768-40576816)
chr7 (105-149)||(42255903-42255947)
chr7 (97-149)||(43869913-43869965)
chr7 (87-123)||(44568658-44568694)
[»] chr1 (40 HSPs)
chr1 (93-149)||(46075051-46075107)
chr1 (93-141)||(24609921-24609969)
chr1 (88-149)||(9774889-9774950)
chr1 (85-149)||(11710547-11710611)
chr1 (93-149)||(27262910-27262966)
chr1 (93-149)||(27264217-27264273)
chr1 (93-149)||(39163025-39163081)
chr1 (87-149)||(47038862-47038924)
chr1 (93-139)||(48594059-48594105)
chr1 (93-139)||(48598670-48598716)
chr1 (93-146)||(48588965-48589018)
chr1 (93-149)||(23469970-23470026)
chr1 (93-149)||(24611118-24611174)
chr1 (93-149)||(35721103-35721159)
chr1 (93-149)||(37395635-37395691)
chr1 (93-141)||(50164405-50164453)
chr1 (94-149)||(9774040-9774095)
chr1 (86-149)||(20723689-20723752)
chr1 (93-139)||(2604138-2604184)
chr1 (93-137)||(11711266-11711310)
chr1 (93-149)||(13074575-13074631)
chr1 (93-149)||(20722474-20722530)
chr1 (93-149)||(24427370-24427426)
chr1 (83-123)||(25658269-25658309)
chr1 (93-149)||(26863862-26863918)
chr1 (93-149)||(46073887-46073943)
chr1 (93-140)||(45979506-45979553)
chr1 (93-139)||(48856214-48856260)
chr1 (86-123)||(17130051-17130088)
chr1 (96-149)||(17976766-17976819)
chr1 (96-141)||(17977568-17977613)
chr1 (96-149)||(27816721-27816774)
chr1 (93-146)||(48334136-48334189)
chr1 (83-123)||(33000637-33000677)
chr1 (93-141)||(34934756-34934804)
chr1 (93-141)||(35722294-35722342)
chr1 (93-141)||(35911897-35911945)
chr1 (93-141)||(37396849-37396897)
chr1 (91-139)||(51240119-51240167)
chr1 (83-123)||(52254175-52254215)
[»] chr6 (22 HSPs)
chr6 (88-146)||(17516159-17516217)
chr6 (93-149)||(17517310-17517366)
chr6 (93-149)||(34998142-34998198)
chr6 (94-149)||(3279500-3279555)
chr6 (93-149)||(34995116-34995172)
chr6 (93-146)||(29291361-29291414)
chr6 (94-146)||(1171655-1171707)
chr6 (93-149)||(18810534-18810590)
chr6 (86-138)||(20895953-20896005)
chr6 (93-149)||(21165248-21165304)
chr6 (82-141)||(30253548-30253607)
chr6 (93-146)||(1974156-1974209)
chr6 (88-149)||(16995448-16995509)
chr6 (88-149)||(25440674-25440735)
chr6 (93-137)||(20393281-20393325)
chr6 (93-149)||(20897498-20897554)
chr6 (93-149)||(21953208-21953264)
chr6 (93-138)||(1972402-1972447)
chr6 (93-138)||(3276369-3276414)
chr6 (82-123)||(19320758-19320799)
chr6 (90-138)||(13617528-13617576)
chr6 (91-139)||(25439648-25439696)
[»] chr5 (18 HSPs)
chr5 (87-149)||(3936574-3936636)
chr5 (90-149)||(3205103-3205162)
chr5 (88-149)||(27571130-27571191)
chr5 (93-149)||(4565395-4565451)
chr5 (93-149)||(6894011-6894067)
chr5 (93-149)||(31540498-31540554)
chr5 (90-141)||(15604067-15604117)
chr5 (93-151)||(14809165-14809223)
chr5 (93-149)||(3954054-3954110)
chr5 (93-141)||(15599767-15599815)
chr5 (93-141)||(27097314-27097362)
chr5 (93-149)||(31541623-31541679)
chr5 (88-139)||(34911839-34911890)
chr5 (93-131)||(25252643-25252681)
chr5 (93-131)||(25316428-25316466)
chr5 (93-139)||(27570058-27570104)
chr5 (93-149)||(3938061-3938117)
chr5 (93-141)||(34910595-34910642)
[»] chr8 (29 HSPs)
chr8 (88-149)||(22534723-22534784)
chr8 (82-149)||(10718449-10718516)
chr8 (90-146)||(3483632-3483688)
chr8 (93-149)||(10717123-10717179)
chr8 (93-141)||(14197827-14197875)
chr8 (93-141)||(28998002-28998050)
chr8 (88-149)||(36588219-36588280)
chr8 (93-149)||(28996836-28996892)
chr8 (94-149)||(41357367-41357422)
chr8 (93-148)||(45517962-45518017)
chr8 (93-146)||(1420446-1420499)
chr8 (88-149)||(22533314-22533375)
chr8 (93-146)||(39440426-39440479)
chr8 (93-149)||(4182624-4182680)
chr8 (83-123)||(10872907-10872947)
chr8 (93-149)||(22270945-22271001)
chr8 (93-149)||(22272271-22272327)
chr8 (93-149)||(39439926-39439982)
chr8 (81-123)||(27117944-27117986)
chr8 (93-146)||(3680746-3680799)
chr8 (96-149)||(34904510-34904563)
chr8 (88-141)||(45516394-45516447)
chr8 (93-149)||(3031544-3031600)
chr8 (93-149)||(4183980-4184036)
chr8 (93-149)||(30124224-30124280)
chr8 (93-149)||(38456731-38456787)
chr8 (93-149)||(38658483-38658539)
chr8 (93-149)||(41354473-41354529)
chr8 (83-123)||(44997923-44997963)
[»] chr4 (29 HSPs)
chr4 (93-149)||(33137229-33137285)
chr4 (93-149)||(3879088-3879144)
chr4 (93-149)||(22204057-22204113)
chr4 (93-149)||(42359347-42359403)
chr4 (93-149)||(54121701-54121757)
chr4 (93-141)||(3880505-3880553)
chr4 (85-141)||(29060891-29060947)
chr4 (93-141)||(32699323-32699371)
chr4 (93-133)||(33134893-33134933)
chr4 (93-141)||(38166497-38166545)
chr4 (89-141)||(41935079-41935131)
chr4 (93-149)||(45618287-45618343)
chr4 (94-149)||(17371846-17371901)
chr4 (84-146)||(34659699-34659761)
chr4 (93-130)||(5259171-5259208)
chr4 (93-146)||(32698001-32698054)
chr4 (88-149)||(55542580-55542641)
chr4 (93-141)||(41933820-41933868)
chr4 (81-149)||(42358022-42358090)
chr4 (93-145)||(44705301-44705353)
chr4 (93-149)||(45619732-45619788)
chr4 (90-141)||(16916066-16916117)
chr4 (110-149)||(40198593-40198632)
chr4 (87-141)||(16573374-16573428)
chr4 (93-146)||(19675624-19675677)
chr4 (96-149)||(54120759-54120812)
chr4 (83-123)||(2322400-2322440)
chr4 (83-123)||(26412182-26412222)
chr4 (304-356)||(47940651-47940703)
[»] scaffold0002 (4 HSPs)
scaffold0002 (96-149)||(344942-344995)
scaffold0002 (93-141)||(374337-374385)
scaffold0002 (93-141)||(345906-345954)
scaffold0002 (93-138)||(376381-376426)
[»] scaffold0562 (1 HSPs)
scaffold0562 (93-149)||(9924-9980)
[»] scaffold0517 (2 HSPs)
scaffold0517 (93-149)||(11523-11579)
scaffold0517 (93-141)||(10317-10365)
[»] scaffold0230 (1 HSPs)
scaffold0230 (93-149)||(432-488)
[»] scaffold0106 (2 HSPs)
scaffold0106 (93-149)||(30908-30964)
scaffold0106 (93-149)||(29731-29787)
[»] scaffold0001 (2 HSPs)
scaffold0001 (93-149)||(120986-121042)
scaffold0001 (93-149)||(119595-119651)
[»] scaffold0095 (1 HSPs)
scaffold0095 (93-146)||(42759-42812)
[»] scaffold0516 (1 HSPs)
scaffold0516 (93-141)||(1144-1192)
[»] scaffold0176 (1 HSPs)
scaffold0176 (81-123)||(21686-21728)
[»] scaffold0765 (1 HSPs)
scaffold0765 (94-139)||(1863-1908)
[»] scaffold0009 (1 HSPs)
scaffold0009 (93-141)||(202581-202629)


Alignment Details
Target: chr2 (Bit Score: 86; Significance: 6e-41; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 12268187 - 12268276
Alignment:
Q  1 cctagtgtaaacctcattccaagttttgtttaatgatattgatacattcaagatgagaataccacacttacgatgacattttaaaataaa 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12268187 cctagtgtaaacctcattccaagttttgtttaatgatattgatacattcaagatgagaataccacacttacaatgacattttaaaataaa 12268276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 277 - 414
Target Start/End: Original strand, 12268283 - 12268420
Alignment:
Q  277 aaaccaatttttcatttaagnnnnnnnaaaatttctttgataaacaaattatagcaaaaagatgatgcactataaaaatcttctttttnnnnnnnttata 376  Q
    ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||  |||||||||||  ||||||||       |||||    
T  12268283 aaaccaatttttcatttaagtttttttaaaatttctttgataaacaaattatagcaaaaagatgacacactataaaaaatttctttttaaaaaaattata 12268382  T
Q  377 acaatcgagctcaaaatcaacagcactccatttttgct 414  Q
    ||||||||||||||||| || |||||||||||||||||    
T  12268383 acaatcgagctcaaaattaatagcactccatttttgct 12268420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 84 - 149
Target Start/End: Original strand, 1777462 - 1777527
Alignment:
Q  84 aaataaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||| |||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||||    
T  1777462 aaataaaggctaaaatatgtttttggtccctgcaaatatagcgagtttgagttttggtccctggta 1777527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 25979319 - 25979252
Alignment:
Q  82 taaaataaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||| ||| |||||||||||||||| ||||||||||||| |||| ||||||||||||| |||||||    
T  25979319 taaaattaaggctaaaatatgtttttggtccctgcaaatatagcgaatttgggttttggtccctggta 25979252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 2412485 - 2412429
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||| || |||||||    
T  2412485 ctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctggta 2412429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 23861754 - 23861810
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||||||| |||||||    
T  23861754 ctaaaatatgtttttggtccctgcaaatatggagagtttggattttggtccctggta 23861810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 23863109 - 23863061
Alignment:
Q  91 gactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttg 139  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||    
T  23863109 gactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttg 23863061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 25977872 - 25977928
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| ||||||||||||| | |||||||||||||||| |||||||    
T  25977872 ctaaaatatgtttttggtccctgcaaatatagtgagtttgggttttggtccctggta 25977928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 25282409 - 25282461
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcct 145  Q
    |||||||||||||||| |||||| ||||||| |||||||| ||||||||||||    
T  25282409 ctaaaatatgtttttggtccctgtaaatatgtcgagtttgagttttggttcct 25282461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 24754214 - 24754171
Alignment:
Q  94 taaaatatgtttttgatccctgcaaatatggcgagtttgggttt 137  Q
    ||||||||||||||| |||||||||||||||||| |||||||||    
T  24754214 taaaatatgtttttggtccctgcaaatatggcgaatttgggttt 24754171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 36837834 - 36837779
Alignment:
Q  94 taaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||| |||||| || |||||||||| |||||||||||||||||| |||||||    
T  36837834 taaaatatatttttggtctctgcaaatatagcgagtttgggttttggtccctggta 36837779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 3924923 - 3924867
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| ||| |||||||||||||||||||| ||||| || ||||||    
T  3924923 ctaaaatatgcttttgctccttgcaaatatggcgagtttggattttgatttctggta 3924867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 11087051 - 11087099
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||| |||| |||||||||||||| |||||||||| |||||||    
T  11087051 ctaaaatatgattttaatccctgcaaatatagcgagtttggcttttggt 11087099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 11088737 - 11088681
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||  ||| ||||||||| |||| |||| ||||||||||||||||    
T  11088737 ctaaaatatgtttttcgtccatgcaaatatagcgaatttgagttttggttcctggta 11088681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 19604976 - 19604920
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| |||||| |||||||||   ||||||||||||| |||||||    
T  19604976 ctaaaatatgtttttggtccctgtaaatatggctcatttgggttttggtccctggta 19604920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 30843646 - 30843702
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| |||| ||| ||||||||||  ||||||||||||||||| |||||||    
T  30843646 ctaaaatatgcttttaatcactgcaaatataacgagtttgggttttggtccctggta 30843702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 8809588 - 8809655
Alignment:
Q  83 aaaataaagactaaaatatgtttttgatccc-tgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||| |||| |||||||||||||||| |||| |||||||||  ||| ||||||||||||| |||||||    
T  8809588 aaaaaaaaggctaaaatatgtttttggtcccttgcaaatataacgaatttgggttttggtccctggta 8809655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 24358955 - 24358913
Alignment:
Q  81 ttaaaataaagactaaaatatgtttttgatccctgcaaatatg 123  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||    
T  24358955 ttaaaatgaaggctaaaatatggttttgatccctgcaaatatg 24358913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 1137979 - 1138036
Alignment:
Q  89 aagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctg 146  Q
    |||||||||||||| ||||| |||||||||||||| |  |||| ||||||||| ||||    
T  1137979 aagactaaaatatggttttggtccctgcaaatatgcctcgttttggttttggtccctg 1138036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 20245363 - 20245306
Alignment:
Q  93 ctaaaatatg-tttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| |||||||| ||||||||||| |||| |||||||||| || |||||||    
T  20245363 ctaaaatatggtttttgattcctgcaaatatagcgaatttgggttttagtccctggta 20245306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 29182443 - 29182410
Alignment:
Q  90 agactaaaatatgtttttgatccctgcaaatatg 123  Q
    ||||||||||||| ||||||||||||||||||||    
T  29182443 agactaaaatatgattttgatccctgcaaatatg 29182410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 29794373 - 29794321
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctg 146  Q
    |||||||||||||| | ||||||||||||| |||| |||| |||||||||||||    
T  29794373 ctaaaatatgttttgg-tccctgcaaatatagcgaatttgagttttggttcctg 29794321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 1778847 - 1778799
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||| ||||| | ||||||||||| |||| |||||||||||||    
T  1778847 ctaaaatatgcttttggttcctgcaaatatagcgactttgggttttggt 1778799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 4038844 - 4038900
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| |||||||||||| |||||| |  ||||||| ||||||| |||||||    
T  4038844 ctaaaatatgattttgatccctgtaaatatagtaagtttggattttggtacctggta 4038900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 12068412 - 12068368
Alignment:
Q  83 aaaataaagactaaaatatgtttttgatccctgcaaatatggcga 127  Q
    |||||| || |||||||||| ||||||||||||||||||| ||||    
T  12068412 aaaatataggctaaaatatgcttttgatccctgcaaatatagcga 12068368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 25283329 - 25283273
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| || |||||||||| |||| |||| |||||| | |||||||    
T  25283329 ctaaaatatgtttttggtcactgcaaatatagcgaatttgagttttgatccctggta 25283273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 52401007 - 52401075
Alignment:
Q  81 ttaaaataaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  52401007 ttaaaattaaggctaaaatatgtttttggtccctgcaaatatggcgagtttgggttttggtccctggta 52401075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 4705683 - 4705739
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||    
T  4705683 ctaaaatatgcttttgatccctgcaaatatggcgagtttaggttttggtccctggta 4705739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 20489415 - 20489359
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||    
T  20489415 ctaaaatatgtttttggtccctgcaaatatgacgagtttgggttttggtccctggta 20489359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 45267307 - 45267363
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||    
T  45267307 ctaaaatatgtttttgatccctgcaaatatagcgagtttgagttttggtccctggta 45267363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 48035789 - 48035733
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||    
T  48035789 ctaaaatatgtttttgatccctgcaaatatgacgagtttggattttggtccctggta 48035733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 52403181 - 52403125
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||    
T  52403181 ctaaaatatgcttttggtccctgcaaatatggcgagtttgggttttggtccctggta 52403125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 20488365 - 20488424
Alignment:
Q  90 agactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||    
T  20488365 agactaaaatatgtttttggtccctgcaaatatggtgaatttgggttttggtccctggta 20488424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 20585701 - 20585648
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctg 146  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||| ||||    
T  20585701 ctaaaatatgtttttgatccctgcaaatatagcgagtttggattttggtccctg 20585648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 39820661 - 39820605
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| ||||||||||||| |||||||||||||||||| |||||||    
T  39820661 ctaaaatatggttttggtccctgcaaatatagcgagtttgggttttggtccctggta 39820605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 42446528 - 42446576
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  42446528 ctaaaatatgcttttggtccctgcaaatatggcgagtttgggttttggt 42446576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 45268627 - 45268571
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||||||||||| |||||||||||||| || ||||||||||||||| |||||||    
T  45268627 ctaaaatatgtttttaatccctgcaaatatagcaagtttgggttttggtccctggta 45268571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 53121304 - 53121360
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||| || |||||||    
T  53121304 ctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctggta 53121360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 32637245 - 32637189
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| |||||| |||| | ||||||||||||||||||||||||||    
T  32637245 ctaaaatatgcttttggtccctgtaaatgtagcgagtttgggttttggttcctggta 32637189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 38505636 - 38505588
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||| ||||| ||||||||||||||||||||||| ||||||||    
T  38505636 ctaaaatatgcttttgctccctgcaaatatggcgagtttgagttttggt 38505588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 40476223 - 40476271
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||||||||| ||||||||||||| |||||||||| |||||||    
T  40476223 ctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggt 40476271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 42444040 - 42444088
Alignment:
Q  94 taaaatatgtttttgatccctgcaaatatggcgagtttgggttttggtt 142  Q
    ||||||||||||||| |||||||||||||||| ||||||||||| ||||    
T  42444040 taaaatatgtttttggtccctgcaaatatggcaagtttgggtttgggtt 42444088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 46026078 - 46026126
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||||||||| ||||||||||||| |||||||||| |||||||    
T  46026078 ctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggt 46026126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 48033060 - 48033116
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| ||| ||||||||||| |||||||| ||||||| |||||||    
T  48033060 ctaaaatatgtttttggtccttgcaaatatggtgagtttggattttggtccctggta 48033116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 52708674 - 52708626
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||| ||||| ||||||||||||| ||||||||||||||||||    
T  52708674 ctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggt 52708626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 9855170 - 9855228
Alignment:
Q  83 aaaataaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    ||||||| | |||||||||| |||||||||||| |||||| |||||||||| |||||||    
T  9855170 aaaataatggctaaaatatgattttgatccctgtaaatatagcgagtttggattttggt 9855228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 40477437 - 40477383
Alignment:
Q  87 taaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    ||||| |||||||||| ||||| |||||||||||||  |||||||||||||||||    
T  40477437 taaaggctaaaatatgattttggtccctgcaaatataacgagtttgggttttggt 40477383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 977900 - 977855
Alignment:
Q  96 aaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    ||||||| ||||| |||||||||||||| |||||||||||||||||    
T  977900 aaatatgcttttggtccctgcaaatatgacgagtttgggttttggt 977855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 3416497 - 3416553
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| |||||||||||| |||||| || ||||||| ||||||| |||||||    
T  3416497 ctaaaatatgattttgatccctgtaaatatagcaagtttggtttttggtccctggta 3416553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 42447844 - 42447788
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||||| |||||||||| ||  ||||||||||||||| |||||||    
T  42447844 ctaaaatatgcttttgattcctgcaaatacggttagtttgggttttggtccctggta 42447788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 46104345 - 46104401
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| ||||||||||||| ||||||||| ||||| || |||||||    
T  46104345 ctaaaatatgattttggtccctgcaaatatagcgagtttgagtttttgtccctggta 46104401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 47433866 - 47433810
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| ||||||||||||| |||| |||| |||||||| |||||||    
T  47433866 ctaaaatatggttttggtccctgcaaatatagcgaatttgagttttggtccctggta 47433810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 54437524 - 54437476
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||||||||| ||||||||||||| |||| |||| ||||||||    
T  54437524 ctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttggt 54437476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 22508738 - 22508785
Alignment:
Q  94 taaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    ||||||||| ||||| ||||||||||||| ||||||||| ||||||||    
T  22508738 taaaatatgattttggtccctgcaaatatagcgagtttgagttttggt 22508785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 39819308 - 39819370
Alignment:
Q  87 taaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||| |||||||||| ||||  ||||||||||||| |||||||||  ||||||| |||||||    
T  39819308 taaagcctaaaatatggttttagtccctgcaaatatagcgagtttgaattttggtccctggta 39819370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 41780875 - 41780821
Alignment:
Q  83 aaaataaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttt 137  Q
    |||| |||| ||||||||||||||||||||||  |||||| || |||||||||||    
T  41780875 aaaaaaaaggctaaaatatgtttttgatccctaaaaatatagcaagtttgggttt 41780821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 44507856 - 44507806
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttc 143  Q
    |||||||||| ||||| ||||||||||||| |||||||||  |||||||||    
T  44507856 ctaaaatatgattttggtccctgcaaatatagcgagtttgaattttggttc 44507806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 3417858 - 3417813
Alignment:
Q  84 aaataaagactaaaatatgtttttgatccctgcaaatatggcgagt 129  Q
    |||| ||| |||||||||||||||| |||||| |||||||||||||    
T  3417858 aaatcaaggctaaaatatgtttttggtccctgtaaatatggcgagt 3417813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 51004135 - 51004192
Alignment:
Q  84 aaataaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    ||||| || |||||||||||||||   ||||| ||||||||||| |||||||||||||    
T  51004135 aaatataggctaaaatatgtttttagaccctgtaaatatggcgaatttgggttttggt 51004192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 976782 - 976838
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||||||||||||||||| |||| |||  ||||| || |||||||    
T  976782 ctaaaatatgcttttgatccctgcaaatatagcgaatttaagttttagtccctggta 976838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 15782217 - 15782261
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttt 137  Q
    ||||||||| |||||| ||||||||||||| ||||||||| ||||    
T  15782217 ctaaaatatatttttggtccctgcaaatatagcgagtttgagttt 15782261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 32635596 - 32635652
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||||| |||||  ||| || |||||| |||||||||||||||||| |||||||    
T  32635596 ctaaaatatattttttgtccttgtaaatatagcgagtttgggttttggtccctggta 32635652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 43641145 - 43641201
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||  ||||||||||||| |||||||||| || |||| |||||||    
T  43641145 ctaaaatatgcttttagtccctgcaaatatagcgagtttggattatggtccctggta 43641201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 44802552 - 44802516
Alignment:
Q  87 taaagactaaaatatgtttttgatccctgcaaatatg 123  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  44802552 taaaggctaaaatatgattttgatccctgcaaatatg 44802516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 46027474 - 46027418
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||  ||||| ||||||||||||| |||||||||  ||||||| |||||||    
T  46027474 ctaaaatatacttttggtccctgcaaatatagcgagtttgaattttggtccctggta 46027418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 52707539 - 52707591
Alignment:
Q  94 taaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctg 146  Q
    ||||||||||||||| ||| ||||||||| |||| |||| |||||||| ||||    
T  52707539 taaaatatgtttttggtccttgcaaatatagcgaatttgagttttggtccctg 52707591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 41693636 - 41693703
Alignment:
Q  82 taaaataaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  41693636 taaattaaaggctaaaatatgtttttgatccctgcaaatatggcgaatttgggttttggtccctggta 41693703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 35212070 - 35212126
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||    
T  35212070 ctaaaatatgtttttggtccctgcaaatatgacgagtttgggttttggtccctggta 35212126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 24195603 - 24195665
Alignment:
Q  87 taaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||| |||||||||||||||| ||||||||||||| |||||||||||||||| | |||||||    
T  24195603 taaaggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttgctccctggta 24195665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 17066427 - 17066483
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| |||| |||||||||||||| |||||||||||||||||| |||||||    
T  17066427 ctaaaatatgcttttaatccctgcaaatatagcgagtttgggttttggtccctggta 17066483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 41695012 - 41694956
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||||||||||| |||||||||||||| ||||||||| |||||||| |||||||    
T  41695012 ctaaaatatgtttttcatccctgcaaatatagcgagtttgagttttggtccctggta 41694956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 43066004 - 43066059
Alignment:
Q  94 taaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||| |||||||||||||| ||||||||| |||||||||| |||||    
T  43066004 taaaatatgttttttatccctgcaaatatagcgagtttgagttttggttcttggta 43066059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 39619848 - 39619798
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttc 143  Q
    |||||||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  39619848 ctaaaatatgcttttggtccatgcaaatatggcgagtttgggttttggttc 39619798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 42254954 - 42255016
Alignment:
Q  87 taaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||| |||||||||| ||||| |||||| |||||||||||||||| |||||||| |||||||    
T  42254954 taaaggctaaaatatgcttttggtccctgtaaatatggcgagtttgagttttggtccctggta 42255016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 13418952 - 13419008
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| ||||||||||||| |||| ||||||| ||||| |||||||    
T  13418952 ctaaaatatgtttttggtccctgcaaatattgcgaatttgggtattggtccctggta 13419008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 24197160 - 24197104
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| ||||||||||||| |||| |||| ||||||||||||||||    
T  24197160 ctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggttcctggta 24197104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 31489992 - 31489944
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||||||||| |||||||||||||  |||||||||||||||||    
T  31489992 ctaaaatatgtttttggtccctgcaaatataacgagtttgggttttggt 31489944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 31848201 - 31848145
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||  ||||||||||||| |||| ||||||||||||| |||||||    
T  31848201 ctaaaatatgtttttagtccctgcaaatatagcgaatttgggttttggtccctggta 31848145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 12385763 - 12385708
Alignment:
Q  94 taaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||||| ||||| ||||||||||||| |||||||||| ||||||| |||||||    
T  12385763 taaaatatgattttggtccctgcaaatatagcgagtttggattttggtccctggta 12385708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 38742184 - 38742231
Alignment:
Q  94 taaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    ||||||||||||||  ||||||||||||| ||||||||||||||||||    
T  38742184 taaaatatgtttttagtccctgcaaatatagcgagtttgggttttggt 38742231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 5611564 - 5611519
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggtttt 138  Q
    |||||||||| ||||| ||||||||||||| |||||||||||||||    
T  5611564 ctaaaatatgattttggtccctgcaaatatagcgagtttgggtttt 5611519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 28462697 - 28462629
Alignment:
Q  81 ttaaaataaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||| ||| ||||||||||| ||||| || ||||||||||| ||| ||||||||||| | |||||||    
T  28462697 ttaaaaaaaatactaaaatatgcttttggtctctgcaaatatgacgaatttgggttttgatccctggta 28462629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 31853550 - 31853598
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||||||||| ||||||||||||| | |||||||| |||||||    
T  31853550 ctaaaatatgtttttggtccctgcaaatattgtgagtttggattttggt 31853598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 32197966 - 32197918
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||| ||||| ||||||||||||| |||| |||||||||||||    
T  32197966 ctaaaatatgcttttggtccctgcaaatatagcgaatttgggttttggt 32197918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 36748200 - 36748247
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||||||||| ||||||||||||| | ||||||||||||||||    
T  36748200 ctaaaatatgtttttggtccctgcaaatat-gagagtttgggttttggt 36748247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 11217127 - 11217072
Alignment:
Q  94 taaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||||| ||||| ||||||||||||| |||||||||  ||||||| |||||||    
T  11217127 taaaatatgcttttggtccctgcaaatatagcgagtttgaattttggtccctggta 11217072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 123
Target Start/End: Complemental strand, 28263074 - 28263039
Alignment:
Q  88 aaagactaaaatatgtttttgatccctgcaaatatg 123  Q
    ||||||||||||||| ||||||||||||||||||||    
T  28263074 aaagactaaaatatggttttgatccctgcaaatatg 28263039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 32544830 - 32544783
Alignment:
Q  94 taaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    ||||||||| ||||| ||||||||||||| |||| |||||||||||||    
T  32544830 taaaatatgattttggtccctgcaaatatagcgaatttgggttttggt 32544783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 8555817 - 8555767
Alignment:
Q  73 atgacattttaaaataaagactaaaatatgtttttgatccctgcaaatatg 123  Q
    |||| |||||||||||||| |||||||||| ||||  ||||||||||||||    
T  8555817 atgatattttaaaataaaggctaaaatatggttttagtccctgcaaatatg 8555767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 36749314 - 36749256
Alignment:
Q  83 aaaataaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||| |||| |||||||||||||||| ||  |||||||||| |||||||| ||||||||    
T  36749314 aaaaaaaaggctaaaatatgtttttggtcattgcaaatatgacgagtttgagttttggt 36749256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 554242 - 554295
Alignment:
Q  88 aaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||| |||||||||  | ||| ||||||||||||| ||||||||||||||||||    
T  554242 aaaggctaaaatataatattggtccctgcaaatatagcgagtttgggttttggt 554295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 32196686 - 32196739
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctg 146  Q
    |||||||||||||||| ||||||||||||| |||  ||||| ||||||| ||||    
T  32196686 ctaaaatatgtttttggtccctgcaaatatagcgtatttggattttggtccctg 32196739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 39618661 - 39618713
Alignment:
Q  96 aaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||||||||| ||  |||||| ||||||||||||||||||||| |||||||    
T  39618661 aaatatgtttttg-tctatgcaaaaatggcgagtttgggttttggtccctggta 39618713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 5610159 - 5610203
Alignment:
Q  94 taaaatatgtttttgatccctgcaaatatggcgagtttgggtttt 138  Q
    ||||||||| |||||||||||||||||||  ||| ||||||||||    
T  5610159 taaaatatgcttttgatccctgcaaatataacgaatttgggtttt 5610203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 12933421 - 12933477
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| ||||||||||||| | |||||||  ||||||| |||||||    
T  12933421 ctaaaatatgcttttggtccctgcaaatatagtgagtttgaattttggtccctggta 12933477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 25046297 - 25046249
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||| ||||| ||| |||||||||||||||||| | |||||||    
T  25046297 ctaaaatatgattttggtccttgcaaatatggcgagtttagattttggt 25046249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 25988757 - 25988717
Alignment:
Q  83 aaaataaagactaaaatatgtttttgatccctgcaaatatg 123  Q
    ||||||||| |||||||||| ||||| ||||||||||||||    
T  25988757 aaaataaaggctaaaatatggttttggtccctgcaaatatg 25988717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 34878129 - 34878093
Alignment:
Q  87 taaagactaaaatatgtttttgatccctgcaaatatg 123  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  34878129 taaaggctaaaatatggttttgatccctgcaaatatg 34878093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 40576768 - 40576816
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||| ||||| |||||||||||||| ||| ||||| |||||||    
T  40576768 ctaaaatatgcttttggtccctgcaaatatgacgaatttggattttggt 40576816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 42255947 - 42255903
Alignment:
Q  105 tttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||| |||||||||||||| |||||||| |||||||| |||||||    
T  42255947 tttggtccctgcaaatatgacgagtttgagttttggtccctggta 42255903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 43869965 - 43869913
Alignment:
Q  97 aatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||| ||||| ||||||||||||| || | ||||||||||||| |||||||    
T  43869965 aatatggttttggtccctgcaaatatagccaatttgggttttggtccctggta 43869913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 44568694 - 44568658
Alignment:
Q  87 taaagactaaaatatgtttttgatccctgcaaatatg 123  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  44568694 taaaggctaaaatatggttttgatccctgcaaatatg 44568658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 46075107 - 46075051
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  46075107 ctaaaatatgtttttgatccctgcaaatatagcgagtttgggttttggtccctggta 46075051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 24609921 - 24609969
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24609921 ctaaaatatgtttttggtccctgcaaatatggcgagtttgggttttggt 24609969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 9774950 - 9774889
Alignment:
Q  88 aaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||| |||||||||| ||||| ||||||||||||| |||||||||||||||||| |||||||    
T  9774950 aaaggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggta 9774889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 11710547 - 11710611
Alignment:
Q  85 aataaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||| ||||||||||||||||||||||| ||||||  |||| |||||||||||| |||||||    
T  11710547 aataaaggctaaaatatgtttttgatccctgtaaatataacgaggttgggttttggtccctggta 11710611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 27262910 - 27262966
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||||    
T  27262910 ctaaaatatgtttttggtccctgcaaatatagcgagtttgtgttttggtccctggta 27262966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 27264273 - 27264217
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| ||||||||||||| |||||||||||||||||| |||||||    
T  27264273 ctaaaatatgattttggtccctgcaaatatagcgagtttgggttttggtccctggta 27264217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 39163081 - 39163025
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||||    
T  39163081 ctaaaatatgcttttggtccctgcaaatatggcgaggttgggttttggtccctggta 39163025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 47038862 - 47038924
Alignment:
Q  87 taaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||| |||||||||||||||  ||||||||||||| || ||||||||||||||| |||||||    
T  47038862 taaaggctaaaatatgtttttagtccctgcaaatatagctagtttgggttttggtccctggta 47038924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 48594105 - 48594059
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttg 139  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||    
T  48594105 ctaaaatatgtttttggtccctgtaaatatggcgagtttgggttttg 48594059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 48598716 - 48598670
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttg 139  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||    
T  48598716 ctaaaatatgtttttggtccctgtaaatatggcgagtttgggttttg 48598670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 48589018 - 48588965
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctg 146  Q
    |||||||||||||||| |||||| |||||||| |||||||||||||||| ||||    
T  48589018 ctaaaatatgtttttggtccctgtaaatatggtgagtttgggttttggtccctg 48588965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 23470026 - 23469970
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| ||||||||||||| |||||||| ||||||| | |||||||    
T  23470026 ctaaaatatgtttttggtccctgcaaatatagcgagtttcggttttgatccctggta 23469970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 24611174 - 24611118
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| |||||| ||||||| |||||||| |||||||| |||||||    
T  24611174 ctaaaatatgtttttggtccctgtaaatatgacgagtttgagttttggtccctggta 24611118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 35721103 - 35721159
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| |||||||||||||  ||| ||||||||||||| |||||||    
T  35721103 ctaaaatatgtttttggtccctgcaaatataacgaatttgggttttggtccctggta 35721159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 37395635 - 37395691
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| ||||||||||||| |||  ||||||||||||| |||||||    
T  37395635 ctaaaatatgtttttggtccctgcaaatatagcgtatttgggttttggtccctggta 37395691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 50164405 - 50164453
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||| ||||| ||||||||||||||||||||||| ||||||||    
T  50164405 ctaaaatatgcttttggtccctgcaaatatggcgagtttgagttttggt 50164453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 9774040 - 9774095
Alignment:
Q  94 taaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||||||||||| |||||||||||||  |||||||| |||||||| |||||||    
T  9774040 taaaatatgtttttggtccctgcaaatataacgagtttgagttttggtccctggta 9774095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 20723752 - 20723689
Alignment:
Q  86 ataaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||| |||||||||||||||| ||||||||||||| |||| |||| ||||| || |||||||    
T  20723752 ataaaggctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttagtccctggta 20723689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 2604184 - 2604138
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttg 139  Q
    |||||||||||||||  ||||||||||||||| ||||||||||||||    
T  2604184 ctaaaatatgtttttagtccctgcaaatatggggagtttgggttttg 2604138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 11711310 - 11711266
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttt 137  Q
    |||||||||||||||| ||||||||||||| |||| |||||||||    
T  11711310 ctaaaatatgtttttggtccctgcaaatatagcgaatttgggttt 11711266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 13074631 - 13074575
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||||| |||||| | |||||||||||| |||||||| |||||||| |||||||    
T  13074631 ctaaaatatatttttggttcctgcaaatatgacgagtttgagttttggtccctggta 13074575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 20722474 - 20722530
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||| || ||||| ||||||||||||| |||| ||||||||||||| |||||||    
T  20722474 ctaaaatgtgcttttggtccctgcaaatatagcgaatttgggttttggtccctggta 20722530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 24427426 - 24427370
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| ||||| ||||||| ||||||||| ||||| || |||||||    
T  24427426 ctaaaatatgtttttggtccctacaaatatagcgagtttgagttttagtccctggta 24427370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 25658309 - 25658269
Alignment:
Q  83 aaaataaagactaaaatatgtttttgatccctgcaaatatg 123  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  25658309 aaaataaagactaaaatattcttttgatccctgcaaatatg 25658269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 26863862 - 26863918
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||| |||||||| ||||||||||||| |||| |||| |||||||| |||||||    
T  26863862 ctaaaatgtgtttttggtccctgcaaatatagcgaatttgagttttggtccctggta 26863918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 46073887 - 46073943
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||||||||||||||||| || | |||||||||| || |||||||    
T  46073887 ctaaaatatgcttttgatccctgcaaatatagcaaatttgggttttagtccctggta 46073943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 45979553 - 45979506
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttgg 140  Q
    |||||||||||||||| ||||||||||||| |||| |||| |||||||    
T  45979553 ctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttgg 45979506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 48856214 - 48856260
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttg 139  Q
    ||||||||||||||| |||| ||||||||||| |||||| |||||||    
T  48856214 ctaaaatatgtttttaatccttgcaaatatggtgagtttaggttttg 48856260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 17130088 - 17130051
Alignment:
Q  86 ataaagactaaaatatgtttttgatccctgcaaatatg 123  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  17130088 ataaagactaaaatatggttttggtccctgcaaatatg 17130051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 17976766 - 17976819
Alignment:
Q  96 aaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||| ||||| | ||||||||||| |||| ||||||||||||| |||||||    
T  17976766 aaatatggttttggttcctgcaaatatagcgaatttgggttttggtccctggta 17976819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 17977613 - 17977568
Alignment:
Q  96 aaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    ||||||| ||||| ||||||||||||| |||| |||||||||||||    
T  17977613 aaatatggttttggtccctgcaaatatagcgaatttgggttttggt 17977568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 27816774 - 27816721
Alignment:
Q  96 aaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||| ||||| ||||||||||||| || | ||||||||||||| |||||||    
T  27816774 aaatatggttttggtccctgcaaatatagccaatttgggttttggtccctggta 27816721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 48334189 - 48334136
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctg 146  Q
    |||||||||| ||||| ||||| ||||||| |||| |||| |||||||||||||    
T  48334189 ctaaaatatgcttttggtccctacaaatatagcgaatttgagttttggttcctg 48334136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 33000677 - 33000637
Alignment:
Q  83 aaaataaagactaaaatatgtttttgatccctgcaaatatg 123  Q
    ||||||||| |||||||||| ||||| ||||||||||||||    
T  33000677 aaaataaaggctaaaatatggttttggtccctgcaaatatg 33000637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 34934804 - 34934756
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||| ||||  ||||||||||||| |||| |||||||||||||    
T  34934804 ctaaaatatgctttttgtccctgcaaatatagcgaatttgggttttggt 34934756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 35722342 - 35722294
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||||||||| |||||| |||||| |||| ||||| |||||||    
T  35722342 ctaaaatatgtttttggtccctgtaaatatagcgaatttggattttggt 35722294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 35911945 - 35911897
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||| ||||| ||||||||||||| |||| ||||| |||||||    
T  35911945 ctaaaatatgcttttggtccctgcaaatatagcgaatttggattttggt 35911897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 37396897 - 37396849
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||| ||||| ||||||||||||| |||| |||| ||||||||    
T  37396897 ctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggt 37396849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 51240119 - 51240167
Alignment:
Q  91 gactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttg 139  Q
    |||||||||||||||||| || |||||||||| |||| ||||| |||||    
T  51240119 gactaaaatatgtttttggtctctgcaaatatagcgaatttggattttg 51240167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 52254175 - 52254215
Alignment:
Q  83 aaaataaagactaaaatatgtttttgatccctgcaaatatg 123  Q
    ||||||||| |||||||||| |||| |||||||||||||||    
T  52254175 aaaataaaggctaaaatatggttttaatccctgcaaatatg 52254215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 17516159 - 17516217
Alignment:
Q  88 aaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctg 146  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||    
T  17516159 aaagactaaaatatgtttttggtccctgcaaatatggtgagtttgggttttggtccctg 17516217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 17517366 - 17517310
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||    
T  17517366 ctaaaatatgtttttggtccctgcaaatatggcgagtttgagttttggtccctggta 17517310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 34998198 - 34998142
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||    
T  34998198 ctaaaatatgcttttgatccctgcaaatatagcgagtttgggttttggtccctggta 34998142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 3279555 - 3279500
Alignment:
Q  94 taaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||||||||||||||||||||||||| |||||||||  |||||||||||||||    
T  3279555 taaaatatgtttttgatccctgcaaatatagcgagtttgaattttggttcctggta 3279500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 34995116 - 34995172
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||||||||||||||||| |||| |||| ||||||||||||||||    
T  34995116 ctaaaatatgcttttgatccctgcaaatatagcgaatttgagttttggttcctggta 34995172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 29291361 - 29291414
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctg 146  Q
    |||||||||| ||||| ||| |||||||||||||||||||||||||||| ||||    
T  29291361 ctaaaatatgcttttggtccttgcaaatatggcgagtttgggttttggtccctg 29291414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 1171707 - 1171655
Alignment:
Q  94 taaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctg 146  Q
    |||||||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  1171707 taaaatatgtttttgatccctgcaaatataacgagtttggtttttggtccctg 1171655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 18810534 - 18810590
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| ||||||||||||| | |||||||||||||||| |||||||    
T  18810534 ctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctggta 18810590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 20895953 - 20896005
Alignment:
Q  86 ataaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggtttt 138  Q
    ||||||||||||||||||||||| ||||||||||||| |||| |||| |||||    
T  20895953 ataaagactaaaatatgtttttggtccctgcaaatatagcgaatttgagtttt 20896005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 21165248 - 21165304
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| ||||||||||||| ||||||||| |||||||| |||||||    
T  21165248 ctaaaatatgcttttggtccctgcaaatatagcgagtttgtgttttggtccctggta 21165304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 30253607 - 30253548
Alignment:
Q  82 taaaataaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    ||||| ||||||||||||||||||||| ||||||||||||  |||||| || ||||||||    
T  30253607 taaaaaaaagactaaaatatgtttttggtccctgcaaatacagcgagtatgagttttggt 30253548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 1974209 - 1974156
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctg 146  Q
    |||||||||||||||||||| ||||||||| |||| |||| |||||||| ||||    
T  1974209 ctaaaatatgtttttgatccttgcaaatatagcgaatttgagttttggtccctg 1974156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 16995448 - 16995509
Alignment:
Q  88 aaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||| |||||||||||||||| |||||||||||||   || ||||||||||||| |||||||    
T  16995448 aaaggctaaaatatgtttttggtccctgcaaatataaagaatttgggttttggtccctggta 16995509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 25440735 - 25440674
Alignment:
Q  88 aaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||| |||||| ||| | |||||||||||||||||  ||||||| |||||||    
T  25440735 aaagactaaaatatatttttggtccttacaaatatggcgagtttgaattttggtccctggta 25440674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 20393325 - 20393281
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttt 137  Q
    |||||||||| ||||||||||||||||||| |||| |||||||||    
T  20393325 ctaaaatatgcttttgatccctgcaaatatagcgaatttgggttt 20393281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 20897554 - 20897498
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| ||||||||||||| | || ||||||||||||| |||||||    
T  20897554 ctaaaatatggttttggtccctgcaaatatagtgaatttgggttttggtccctggta 20897498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 21953208 - 21953264
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| ||||||||||||| |||| ||||| ||||||| |||||||    
T  21953208 ctaaaatatgcttttggtccctgcaaatatagcgaatttggattttggtccctggta 21953264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 1972402 - 1972447
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggtttt 138  Q
    |||||||||||||||| ||||||||||||  |||| ||||||||||    
T  1972402 ctaaaatatgtttttggtccctgcaaataaagcgaatttgggtttt 1972447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 3276369 - 3276414
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggtttt 138  Q
    |||||||||||||||| ||||||||||||| |||| ||||| ||||    
T  3276369 ctaaaatatgtttttggtccctgcaaatatagcgaatttggatttt 3276414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 19320758 - 19320799
Alignment:
Q  82 taaaataaagactaaaatatgtttttgatccctgcaaatatg 123  Q
    |||||||| |||||||||||| ||||| ||||||||||||||    
T  19320758 taaaataatgactaaaatatggttttggtccctgcaaatatg 19320799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 13617528 - 13617576
Alignment:
Q  90 agactaaaatatgtttttgatccctgcaaatatggcgagtttgggtttt 138  Q
    ||||||||||||| ||||| ||||||||||||||||  |||| ||||||    
T  13617528 agactaaaatatggttttggtccctgcaaatatggctcgttttggtttt 13617576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 25439648 - 25439696
Alignment:
Q  91 gactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttg 139  Q
    |||||||||||||||||  |||||||||||||  ||| |||||||||||    
T  25439648 gactaaaatatgtttttagtccctgcaaatataacgattttgggttttg 25439696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 3936574 - 3936636
Alignment:
Q  87 taaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||| |||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||    
T  3936574 taaaggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttggtccctggta 3936636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 90 - 149
Target Start/End: Complemental strand, 3205162 - 3205103
Alignment:
Q  90 agactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||||||||| |||||||    
T  3205162 agactaaaatatgcttttgatccctgcaaatatgatgagtttgggttttggtccctggta 3205103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 27571191 - 27571130
Alignment:
Q  88 aaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||| |||||||||| ||||| ||||||||||||| |||||||||||||||| | |||||||    
T  27571191 aaaggctaaaatatgattttggtccctgcaaatatagcgagtttgggttttgatccctggta 27571130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 4565395 - 4565451
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||  ||||| ||||||| |||||||||||||||||| |||||||    
T  4565395 ctaaaatatgtttttagtccctacaaatatagcgagtttgggttttggtccctggta 4565451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 6894067 - 6894011
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| ||| |||||||||| ||||||| ||||||||| |||||||    
T  6894067 ctaaaatatgtttttggtccttgcaaatatgacgagtttaggttttggtccctggta 6894011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 31540498 - 31540554
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| |||||||||||||  ||| ||||||||||||| |||||||    
T  31540498 ctaaaatatgtttttggtccctgcaaatataacgaatttgggttttggtacctggta 31540554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 15604117 - 15604067
Alignment:
Q  90 agactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||| |||||||| ||| ||||||||||||||||||||||||||||    
T  15604117 agactaaaatgtgtttttggtcc-tgcaaatatggcgagtttgggttttggt 15604067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 14809165 - 14809223
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggtaga 151  Q
    |||||||||||||||||||||| ||||||| |||| ||||| ||||||| ||| |||||    
T  14809165 ctaaaatatgtttttgatccctacaaatatagcgaatttggattttggtccctagtaga 14809223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 3954054 - 3954110
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| ||| |||||||||  ||| ||||||||||||| |||||||    
T  3954054 ctaaaatatgtttttggtccttgcaaatatatcgaatttgggttttggtccctggta 3954110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 15599767 - 15599815
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||| ||||| ||||| |||||||||||| |||||||||||||    
T  15599767 ctaaaatatgcttttggtccctacaaatatggcgaatttgggttttggt 15599815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 27097314 - 27097362
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    ||||||||||||||||||||| | ||||||||  |||||||||||||||    
T  27097314 ctaaaatatgtttttgatccccgtaaatatggtaagtttgggttttggt 27097362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 31541679 - 31541623
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||||||||||||||||||||||||||  ||| ||| |||||| || |||||||    
T  31541679 ctaaaatatgtttttgatccctgcaaatataacgaattttggtttttgtccctggta 31541623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 34911890 - 34911839
Alignment:
Q  88 aaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttg 139  Q
    |||| |||||||||| ||||| ||||||||||||| |||||||||| |||||    
T  34911890 aaaggctaaaatatgattttggtccctgcaaatatagcgagtttggattttg 34911839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 25252643 - 25252681
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagttt 131  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  25252643 ctaaaatatgtttttgatctctgcaaatatagcgagttt 25252681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 25316428 - 25316466
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagttt 131  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  25316428 ctaaaatatgtttttgatctctgcaaatatagcgagttt 25316466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 27570058 - 27570104
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttg 139  Q
    |||||||||| ||||| ||| ||||||||| ||||||||||||||||    
T  27570058 ctaaaatatgattttggtccttgcaaatatagcgagtttgggttttg 27570104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 3938117 - 3938061
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||  ||||||||||||| || ||||| ||||||||| |||||||    
T  3938117 ctaaaatatgcttttagtccctgcaaatatagcaagtttaggttttggtccctggta 3938061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 34910595 - 34910642
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    ||||||||||||||| |||||||||||||| || |||||| ||||||||    
T  34910595 ctaaaatatgttttt-atccctgcaaatatagcaagtttgagttttggt 34910642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 22534784 - 22534723
Alignment:
Q  88 aaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||| |||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||    
T  22534784 aaaggctaaaatatgcttttgatccctgcaaatatagcgagtttgggttttggtccctggta 22534723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 10718516 - 10718449
Alignment:
Q  82 taaaataaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||| || |||||||||| ||||| ||||||||||||| |||||||||||||||||| |||||||    
T  10718516 taaaatataggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggta 10718449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 3483632 - 3483688
Alignment:
Q  90 agactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctg 146  Q
    ||||||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||    
T  3483632 agactaaaatatgtttttggtccctgcaaatatagcgagtttgagttttggtccctg 3483688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 10717123 - 10717179
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| ||||||||||||| |||||||||||||||||| |||||||    
T  10717123 ctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggta 10717179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 14197827 - 14197875
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  14197827 ctaaaatatgtttttggtccctgcaaatatggcgagtttggattttggt 14197875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 28998050 - 28998002
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  28998050 ctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttggt 28998002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 36588219 - 36588280
Alignment:
Q  88 aaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||| |||||||||| ||||| ||||||||||||| ||||||||| |||||||| |||||||    
T  36588219 aaaggctaaaatatgcttttggtccctgcaaatatagcgagtttgcgttttggtccctggta 36588280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 28996836 - 28996892
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| ||||||||||||| | |||||||||||||||| |||||||    
T  28996836 ctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctggta 28996892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 41357422 - 41357367
Alignment:
Q  94 taaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||||||||||| |||  |||||||||| ||||||||||||||||| ||||||    
T  41357422 taaaatatgtttttggtcctcgcaaatatggtgagtttgggttttggtttctggta 41357367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 45518017 - 45517962
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggt 148  Q
    |||||||||| ||||| ||||||||| ||| |||||||||||||||||| ||||||    
T  45518017 ctaaaatatgcttttggtccctgcaagtatagcgagtttgggttttggtccctggt 45517962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 1420499 - 1420446
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctg 146  Q
    |||||||||||||||| ||||||||||||| |||||||||| | ||||| ||||    
T  1420499 ctaaaatatgtttttggtccctgcaaatatagcgagtttggatattggtccctg 1420446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 22533314 - 22533375
Alignment:
Q  88 aaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||| |||||||||| ||||| |||||| | |||| |||||||||||||||||| |||||||    
T  22533314 aaaggctaaaatatgcttttggtccctgtatatatagcgagtttgggttttggtccctggta 22533375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 39440479 - 39440426
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctg 146  Q
    |||||||||| ||||| ||| ||||||||||||||||||| |||||||| ||||    
T  39440479 ctaaaatatgcttttggtccttgcaaatatggcgagtttgagttttggtccctg 39440426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 4182624 - 4182680
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| |||||| |||||| |||| ||||||||||||| |||||||    
T  4182624 ctaaaatatgcttttggtccctgtaaatatagcgaatttgggttttggtccctggta 4182680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 10872907 - 10872947
Alignment:
Q  83 aaaataaagactaaaatatgtttttgatccctgcaaatatg 123  Q
    ||||||||| |||||||||| ||||||||||||||||||||    
T  10872907 aaaataaaggctaaaatatggttttgatccctgcaaatatg 10872947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 22270945 - 22271001
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||||||||||||||||| |||| ||||| |||| || |||||||    
T  22270945 ctaaaatatgcttttgatccctgcaaatatagcgaatttggattttagtccctggta 22271001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 22272327 - 22272271
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| |||| |||||||| |||| ||||||||||||| |||||||    
T  22272327 ctaaaatatgcttttggtccccgcaaatatagcgaatttgggttttggtccctggta 22272271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 39439926 - 39439982
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| |||||||||||||||| |||||| |||||||  |||||||    
T  39439926 ctaaaatatgattttggtccctgcaaatatggctagtttgagttttggaccctggta 39439982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 27117986 - 27117944
Alignment:
Q  81 ttaaaataaagactaaaatatgtttttgatccctgcaaatatg 123  Q
    ||||||||||| |||||||||| ||||| ||||||||||||||    
T  27117986 ttaaaataaaggctaaaatatggttttggtccctgcaaatatg 27117944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 3680799 - 3680746
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctg 146  Q
    |||||||||| |||||||||||||||||||| |  |||| ||||||||| ||||    
T  3680799 ctaaaatatgattttgatccctgcaaatatgcctcgttttggttttggtccctg 3680746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 34904563 - 34904510
Alignment:
Q  96 aaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||| ||||  ||||| ||||||| |||| |||||||||||||||||||||    
T  34904563 aaatatgattttagtcccttcaaatatagcgaatttgggttttggttcctggta 34904510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 45516394 - 45516447
Alignment:
Q  88 aaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    ||||||||||||||||||||  ||| || |||||| |||| |||||||||||||    
T  45516394 aaagactaaaatatgtttttagtccatgtaaatatagcgaatttgggttttggt 45516447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 3031600 - 3031544
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| |||||| |||||||||   ||| ||||||||| |||||||    
T  3031600 ctaaaatatgtttttggtccctgtaaatatggctcatttaggttttggtccctggta 3031544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 4184036 - 4183980
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||  ||||||||||||| | | |||||||||||||| |||||||    
T  4184036 ctaaaatatgcttttagtccctgcaaatatagtgcgtttgggttttggtccctggta 4183980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 30124280 - 30124224
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| ||||||||||||  || |||||| |||||||| |||||||    
T  30124280 ctaaaatatgcttttggtccctgcaaataaagcaagtttgagttttggtccctggta 30124224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 38456787 - 38456731
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| ||||||||||||| || | ||| ||||||||| |||||||    
T  38456787 ctaaaatatgcttttggtccctgcaaatatagcaaatttaggttttggtccctggta 38456731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 38658483 - 38658539
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| || || ||| ||||||||| |||| ||||||||||||| |||||||    
T  38658483 ctaaaatatgcttctggtccatgcaaatatagcgaatttgggttttggtccctggta 38658539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 41354473 - 41354529
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| ||| |  |||||| |||||||||  |||||||||||||||    
T  41354473 ctaaaatatgtttttggtccttataaatatagcgagtttgaattttggttcctggta 41354529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 44997923 - 44997963
Alignment:
Q  83 aaaataaagactaaaatatgtttttgatccctgcaaatatg 123  Q
    ||||||||| |||||||||| ||||| ||||||||||||||    
T  44997923 aaaataaaggctaaaatatgattttggtccctgcaaatatg 44997963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 33137285 - 33137229
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| || |||||||    
T  33137285 ctaaaatatgtttttgatccctgcaaatatagcgagtttgggttttagtccctggta 33137229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 3879088 - 3879144
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||||||||||||||||| |||||||||| ||||||| |||||||    
T  3879088 ctaaaatatgcttttgatccctgcaaatatagcgagtttggattttggtccctggta 3879144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 22204057 - 22204113
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||| || |||||||    
T  22204057 ctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctggta 22204113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 42359403 - 42359347
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| ||||||||||||| |||||||||| ||||||| |||||||    
T  42359403 ctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtccctggta 42359347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 54121757 - 54121701
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| |||||||||||| ||||||||||||||||||| |||||||    
T  54121757 ctaaaatatgattttgctccctgcaaatacggcgagtttgggttttggtccctggta 54121701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 3880553 - 3880505
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||||||    
T  3880553 ctaaaatatgtttttggttcctgcaaatatagcgagtttgggttttggt 3880505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 29060947 - 29060891
Alignment:
Q  85 aataaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    ||||||| ||||||||||||||| |||||||||||||| |||||||||  |||||||    
T  29060947 aataaaggctaaaatatgtttttaatccctgcaaatatagcgagtttgaattttggt 29060891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 32699371 - 32699323
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||||||||| |||||| |||||| ||||||||||||||||||    
T  32699371 ctaaaatatgtttttggtccctgtaaatatagcgagtttgggttttggt 32699323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 33134893 - 33134933
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgg 133  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  33134893 ctaaaatatgtttttgatccctgcaaatatgacgagtttgg 33134933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 38166497 - 38166545
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    ||||||||||||||| |||||||||||||| |||||||||| |||||||    
T  38166497 ctaaaatatgtttttaatccctgcaaatatagcgagtttggattttggt 38166545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 41935131 - 41935079
Alignment:
Q  89 aagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||| ||||||||||||||| |||||||||||||  |||||||||||||||||    
T  41935131 aagattaaaatatgtttttggtccctgcaaatataacgagtttgggttttggt 41935079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 45618287 - 45618343
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||| ||||| ||||| ||||||||||||| |||||||||||||||||| |||||||    
T  45618287 ctaatatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggta 45618343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 17371901 - 17371846
Alignment:
Q  94 taaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||||| |||||||||||||||||||  ||| ||||||||||||| |||||||    
T  17371901 taaaatatgcttttgatccctgcaaatataacgaatttgggttttggtccctggta 17371846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 34659699 - 34659761
Alignment:
Q  84 aaataaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctg 146  Q
    |||| ||| |||||||||| ||||| |||||||||||||||||||||  ||||||||| ||||    
T  34659699 aaatgaaggctaaaatatgcttttggtccctgcaaatatggcgagttaaggttttggtccctg 34659761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 5259208 - 5259171
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtt 130  Q
    |||||||||||||||| |||||||||||||||||||||    
T  5259208 ctaaaatatgtttttggtccctgcaaatatggcgagtt 5259171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 32698001 - 32698054
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctg 146  Q
    |||||||||| ||||||||||||||||||| |||| ||| |||||| |||||||    
T  32698001 ctaaaatatgattttgatccctgcaaatatagcgaatttaggttttagttcctg 32698054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 55542641 - 55542580
Alignment:
Q  88 aaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||| ||||||| |||||||||||||||||||||| ||  ||||||| |||||| |||||||    
T  55542641 aaaggctaaaatctgtttttgatccctgcaaatatagcatgtttgggatttggtccctggta 55542580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 41933820 - 41933868
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||| ||||| || |||||||||| ||||||||||||||||||    
T  41933820 ctaaaatatgattttggtctctgcaaatatagcgagtttgggttttggt 41933868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 42358022 - 42358090
Alignment:
Q  81 ttaaaataaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||| |||| |||||||||||||||| ||||||||||||| |  |||||| |||||| | |||||||    
T  42358022 ttaaaaaaaaggctaaaatatgtttttggtccctgcaaatataggaagtttgagttttgatccctggta 42358090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 44705301 - 44705353
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcct 145  Q
    |||||||||||||||| || |||||||||| | || |||||||||||||||||    
T  44705301 ctaaaatatgtttttggtctctgcaaatatagtgaatttgggttttggttcct 44705353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 45619788 - 45619732
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||  ||||||||||||| |||||||| ||||||| | |||||||    
T  45619788 ctaaaatatgtttttagtccctgcaaatatagcgagtttaggttttgttccctggta 45619732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 16916066 - 16916117
Alignment:
Q  90 agactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    ||||||||||||  ||||| ||||||||||||||| ||||||| ||||||||    
T  16916066 agactaaaatatacttttggtccctgcaaatatggtgagtttgagttttggt 16916117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 149
Target Start/End: Original strand, 40198593 - 40198632
Alignment:
Q  110 tccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  40198593 tccctgcaaatatagcgagtttgggttttggtccctggta 40198632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 141
Target Start/End: Original strand, 16573374 - 16573428
Alignment:
Q  87 taaagactaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    ||||| |||||||||| ||||| || || |||||||||||| |||||||||||||    
T  16573374 taaaggctaaaatatgcttttggtctctacaaatatggcgaatttgggttttggt 16573428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 19675677 - 19675624
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctg 146  Q
    |||||||||| ||||| |||||||||||||  ||||||||| ||||||| ||||    
T  19675677 ctaaaatatgcttttggtccctgcaaatataacgagtttggattttggtccctg 19675624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 54120759 - 54120812
Alignment:
Q  96 aaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||||||||| |  || ||||||| ||||||||| ||||||||||||||||    
T  54120759 aaatatgtttttggtttcttcaaatatagcgagtttgagttttggttcctggta 54120812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 2322440 - 2322400
Alignment:
Q  83 aaaataaagactaaaatatgtttttgatccctgcaaatatg 123  Q
    |||| |||| |||||||||| ||||||||||||||||||||    
T  2322440 aaaaaaaaggctaaaatatggttttgatccctgcaaatatg 2322400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 26412182 - 26412222
Alignment:
Q  83 aaaataaagactaaaatatgtttttgatccctgcaaatatg 123  Q
    |||||| || |||||||||| ||||||||||||||||||||    
T  26412182 aaaatataggctaaaatatggttttgatccctgcaaatatg 26412222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 47940651 - 47940703
Alignment:
Q  304 aaaatttctttgataaacaaattatagcaaaaagatgatgcactataaaaatc 356  Q
    |||| ||||||  |||| |||| |||||||||||||||| |||||||||||||    
T  47940651 aaaaattctttactaaaaaaatcatagcaaaaagatgatacactataaaaatc 47940703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 344942 - 344995
Alignment:
Q  96 aaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||| |||||||    
T  344942 aaatatgattttggtccctgcaaatatggcgagtttgggttttggtccctggta 344995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 374337 - 374385
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  374337 ctaaaatatgattttgatccctgcaaatatagcgagtttgggttttggt 374385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 345954 - 345906
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||||||||| ||||||||||||| |||| |||||||||||||    
T  345954 ctaaaatatgtttttggtccctgcaaatatagcgaatttgggttttggt 345906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 376426 - 376381
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggtttt 138  Q
    |||||||||| ||||| ||||||||||||| |||||||||||||||    
T  376426 ctaaaatatgcttttggtccctgcaaatatagcgagtttgggtttt 376381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0562 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 9924 - 9980
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||||||||||||||||| |||||||||| ||||||| |||||||    
T  9924 ctaaaatatgcttttgatccctgcaaatatagcgagtttggattttggtccctggta 9980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 11579 - 11523
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||||||||| ||||||||||||| |||  ||||||||||||| |||||||    
T  11579 ctaaaatatgtttttggtccctgcaaatatagcgtatttgggttttggtccctggta 11523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 10317 - 10365
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||| ||||| ||||||||||||| |||| |||| ||||||||    
T  10317 ctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggt 10365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 488 - 432
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| ||||||||||||| | |||||||||||||||| |||||||    
T  488 ctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctggta 432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 30964 - 30908
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| ||||||||||||| | |||||||||||||||| |||||||    
T  30964 ctaaaatatggttttggtccctgcaaatatagtgagtttgggttttggtccctggta 30908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 29731 - 29787
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| ||||||||||||   ||||||||| ||||||| |||||||    
T  29731 ctaaaatatgcttttggtccctgcaaataaaacgagtttggattttggtccctggta 29787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 121042 - 120986
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| |||||||||||||  ||||||||||||||||| |||||||    
T  121042 ctaaaatatgcttttggtccctgcaaatataacgagtttgggttttggtccctggta 120986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 119595 - 119651
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctggta 149  Q
    |||||||||| ||||| ||||||||||||| |||| |||| |||||||| |||||||    
T  119595 ctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtccctggta 119651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 42812 - 42759
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggttcctg 146  Q
    |||||||||| ||||| ||| ||||||||||||||||||| |||||||| ||||    
T  42812 ctaaaatatgcttttggtccttgcaaatatggcgagtttgagttttggtccctg 42759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 1192 - 1144
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    ||||||||| |||||| || |||||||||||||||||||| ||||||||    
T  1192 ctaaaatatatttttggtctctgcaaatatggcgagtttgagttttggt 1144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 21686 - 21728
Alignment:
Q  81 ttaaaataaagactaaaatatgtttttgatccctgcaaatatg 123  Q
    |||||| |||| |||||||||| ||||||||||||||||||||    
T  21686 ttaaaaaaaaggctaaaatatggttttgatccctgcaaatatg 21728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0765 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 1863 - 1908
Alignment:
Q  94 taaaatatgtttttgatccctgcaaatatggcgagtttgggttttg 139  Q
    ||||||||| ||||| ||||||||||||| ||||||||| ||||||    
T  1863 taaaatatgattttggtccctgcaaatatagcgagtttgagttttg 1908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 202581 - 202629
Alignment:
Q  93 ctaaaatatgtttttgatccctgcaaatatggcgagtttgggttttggt 141  Q
    |||||||||| ||||| |||||||||||||  ||||||||| |||||||    
T  202581 ctaaaatatgcttttggtccctgcaaatataacgagtttggattttggt 202629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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