View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_24 (Length: 427)
Name: NF4513_low_24
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 179 - 411
Target Start/End: Original strand, 46913384 - 46913616
Alignment:
| Q |
179 |
ctatttctacgacaccacggagcttccaccacctgacttttcttccgtcttcgcctcccaacggttcttcttctcctccccaggcagctccaattccatc |
278 |
Q |
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| T |
46913384 |
ctatttctacgacaccacggagcttccaccacctgacttttcttccgtcttcgcctcccaacggttcttcttctcctccccaggcagctccaattccatc |
46913483 |
T |
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| Q |
279 |
acagagtctccctccaacgacactctaccctgtaataactcgttgataccaagaggaggtagtgtgaagagggtgccaaaatattctgtaaacccttacg |
378 |
Q |
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| T |
46913484 |
acagagtctccctccaacgacactctaccctgtaataactcgttgataccaagaggaggtagtgtgaagagggtgccaaaatattctgtaaacccttacg |
46913583 |
T |
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| Q |
379 |
ttgatttcctccgttctatgcaggaaatgattc |
411 |
Q |
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| T |
46913584 |
ttgatttcctccgttctatgcaggaaatgattc |
46913616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 46413689 - 46413600
Alignment:
| Q |
20 |
aagagaagatactaaagagagagaaagtgagtgaagagcaaaattaaccaacctgattggatttgtttgaaagaaaagtaaaaggaaacc |
109 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46413689 |
aagagaagatactaaagagagagaaagtgagttaagagcaaaattaaccaacctgatttgatttgtttgaaagaaaagtaaaaggaaacc |
46413600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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