View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_27 (Length: 411)
Name: NF4513_low_27
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 278
Target Start/End: Original strand, 52001736 - 52002003
Alignment:
| Q |
11 |
atcatcatcaatttcatgttccacatcatcatctttttctttattctctgaaacactatgaatgcgtgacgcaaatctctttgcagtgtctttgttaaat |
110 |
Q |
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| T |
52001736 |
atcatcatcaacttcatgttccacatcatcatctttttctttattctctgaaacactatgaatgcgtgacgcaaatctctttgcagtgtctttgttaaat |
52001835 |
T |
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| Q |
111 |
agcttgtactgacttctaataaatgactcgttcctacaaatctcaaaatcatcatcgttgtcgctatcatcagtttcagtttcgctgttaatattataag |
210 |
Q |
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| T |
52001836 |
agcttgtactgacttctaataaatgactcgttcctacaaatctcaaaatcatcatcgttgtcgctatcatcagtttcagtttcgctgttaatattataag |
52001935 |
T |
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| Q |
211 |
cattgatatcaaaagccaaaggtatttgattttctggtatttccttcctctgatgatgatcatcaatg |
278 |
Q |
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| T |
52001936 |
cattgatatcaaaagccaaaggtagttgattttctggtatttccttcctctgatgatgatcatcaatg |
52002003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 310 - 393
Target Start/End: Original strand, 52002002 - 52002085
Alignment:
| Q |
310 |
tgagtggtttctttccttttggatcggaagtgttttcaaagttgtagagttttgtgcgtttagaagaggaggcatcatcggagt |
393 |
Q |
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| T |
52002002 |
tgagtggtttctttccttttggatcagaagtgttttcaaagttgtagagttttgtgcgtttagaagaagaggcatcatcggagt |
52002085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 264
Target Start/End: Original strand, 52011785 - 52011878
Alignment:
| Q |
171 |
tcgctatcatcagtttcagtttcgctgttaatattataagcattgatatcaaaagccaaaggtatttgattttctggtatttccttcctctgat |
264 |
Q |
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| T |
52011785 |
tcgctatcattagtttcagtttcattggtaatgatatagtcattaatatccaaatccagtgatatttgattttctgttatttccttcctctgat |
52011878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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