View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_28 (Length: 409)
Name: NF4513_low_28
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 36744697 - 36744297
Alignment:
| Q |
1 |
tttctcttgcaaattcttcatcagtcatccatgctgacttatcagctgtaaatttcaaataattaattacttgagagtaaagtacttagtcaaaaagaca |
100 |
Q |
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| T |
36744697 |
tttctcttgcaaattcttcatcagtcatccatgcagacttatcagctgtaaatttcaaataattaattacttgagagtaaagtaattagtcaaaaagaca |
36744598 |
T |
|
| Q |
101 |
aaagttatacaactgagttagattagcaaaccttgaatgacatggggaggtggatacttgaggaaattttcaccatcagttcggaagatttccttcacca |
200 |
Q |
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| T |
36744597 |
aaagttatacaactgagttagattagcaaaccttgaatgacatggggaggtggatacttgaggaaattttcaccatcagttcggaagatttccttcacca |
36744498 |
T |
|
| Q |
201 |
ttgctatgggactaatagcactgatgatatctgtcggtagcttaactcctccttcgaagaggcaacgaacttcttcgaaattatcaaactctttgtcgaa |
300 |
Q |
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| T |
36744497 |
ttgctatgggactaatagcactgatgatatctgtcggtagcttaactcctccttcgaagaggcaacgaacttcttcgaaattatcaaactctttgtcgaa |
36744398 |
T |
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| Q |
301 |
gtcnnnnnnnttgcgaaatttaggtatcacattttgatttaaacctttcaatccaaatccaaggaagtcagcttgcttcaagtgaccaaaaacttcatct |
400 |
Q |
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| T |
36744397 |
gtcaaaaaaattgcgaaatttaggtatcacattttgatttaaacctttcaatccaaatccaaggaagtcagcttgcttcaagtgaccaaaaacttcatct |
36744298 |
T |
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| Q |
401 |
c |
401 |
Q |
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| T |
36744297 |
c |
36744297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 42693671 - 42693704
Alignment:
| Q |
1 |
tttctcttgcaaattcttcatcagtcatccatgc |
34 |
Q |
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| T |
42693671 |
tttctcttgcaaattcttcatcagtcatccatgc |
42693704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 42688129 - 42688089
Alignment:
| Q |
1 |
tttctcttgcaaattcttcatcagtcatccatgctgactta |
41 |
Q |
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| T |
42688129 |
tttctcttgcaaactcttcatctgtcatccatgcagactta |
42688089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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