View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_31 (Length: 396)
Name: NF4513_low_31
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_31 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 15 - 377
Target Start/End: Original strand, 28768169 - 28768531
Alignment:
| Q |
15 |
gatgaagaccataaagaattcggagcaatggagggaacaaaaccactactaagaagcctctcaacatgcttaccaagaacatcaacttcaagattaacct |
114 |
Q |
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| T |
28768169 |
gatgaagaccataaagaattcggcgcaatggagggaacaaaaccactactaagaagcctctcaacatgcttaccaagaacatcaacttcaagattaacct |
28768268 |
T |
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| Q |
115 |
tttgaccaaccttcttcatgggaacaacaatcttattctgagtataagcaaccaacataaaattgaaacaaccttcatcatcaaaaacatcaaccacagt |
214 |
Q |
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| T |
28768269 |
tttgaccaatcttcttcatgggaacaacaatcttattctgagtataagcaaccaacataaaattgaaacaaccttcatcgtcaaaaacatcaaccacagt |
28768368 |
T |
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| Q |
215 |
caaactagtcccatccacagcaataaaccctttaggaacaatatacttcaacaactccttcttctcaaccctaatcttcacccacaacgaatccccttca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28768369 |
caaactagtcccatccacagcaataaaccctttaggaacaatatacttcaacaactccttcttctcaaccctaatcttcacccacaacgaatccccttca |
28768468 |
T |
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| Q |
315 |
ggaatcatcgaaacaatctcccccgtgccatccacgtgaccttgaacaaaatgcccacccatt |
377 |
Q |
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| T |
28768469 |
ggaatcatcgaaacaatctcccccgtgccatccacgtgaccttgaacaaaatgtccacccatt |
28768531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 66 - 377
Target Start/End: Complemental strand, 89879 - 89568
Alignment:
| Q |
66 |
agaagcctctcaacatgcttaccaagaacatcaacttcaagattaaccttttgaccaaccttcttcatgggaacaacaatcttattctgagtataagcaa |
165 |
Q |
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||||||||||| |||| ||| ||||||| |||||||||||||||||||||||| ||||| ||||||| |||| ||||||||| ||||||| ||||||| |
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| T |
89879 |
agaagcctctccacatacttgccaagaatatcaacttcaagattaaccttttgtccaacattcttcaaaggaataacaatcttgctctgagtgtaagcaa |
89780 |
T |
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| Q |
166 |
ccaacataaaattgaaacaaccttcatcatcaaaaacatcaaccacagtcaaactagtcccatccacagcaataaaccctttaggaacaatatacttcaa |
265 |
Q |
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||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | |
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| T |
89779 |
ccaacatgaaattgaaacaagcttcatcatcaaaaacatcaaccacagtcaaactagtcccatccacagcaatgaaccctttaggtacaatatacttaag |
89680 |
T |
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| Q |
266 |
caactccttcttctcaaccctaatcttcacccacaacgaatccccttcaggaatcatcgaaacaatctcccccgtgccatccacgtgaccttgaacaaaa |
365 |
Q |
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| T |
89679 |
caaatccaccttattaaccctaaccttaatccacaaagaatccctttcaggaaccatagaaacaatctcccccgtgccatccacgtgaccctgtacgaaa |
89580 |
T |
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| Q |
366 |
tgcccacccatt |
377 |
Q |
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|||||||||||| |
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| T |
89579 |
tgcccacccatt |
89568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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