View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_32 (Length: 367)
Name: NF4513_low_32
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 12 - 349
Target Start/End: Original strand, 37677033 - 37677370
Alignment:
| Q |
12 |
tcatcaacgatatttgaaactcctccaactagtgatgaagaacgagccaagttgattgacactcttcaggtttttatgcttttcttaatcttactttcat |
111 |
Q |
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| T |
37677033 |
tcatcaacgatatttgaaactcctccaactagtgatgaagaacgagccaagttgattgacactcttcaggtttttatgcttttcttaatcttactttcat |
37677132 |
T |
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| Q |
112 |
ttctatatatttatcatgactaggccactatacactcacaaagcggacacgacattgacacgatcggacactaacatgtgtttgacatcagaaacgcctt |
211 |
Q |
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| T |
37677133 |
ttctatatatttatcatgactaggccactatacactcacaaagaggacacggcattgacaccatcggacactaacatgtgtttgacatcagacacgcctt |
37677232 |
T |
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| Q |
212 |
atatatgaagtgttagtgctacatagcttggaaactactatcagaacggagattgtgtagtaatttaataattaggagttaggagcttcactatttagta |
311 |
Q |
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| T |
37677233 |
atatatgaagtgttagtgctacatagtttggaagctactatcagaacggagattgtgtagtaatttaataattaggagttaggagcttcactatttagta |
37677332 |
T |
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| Q |
312 |
accatgtttcctattgttcataggatgagacggattag |
349 |
Q |
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| T |
37677333 |
accatgtttcctattgttcataggatgagacggattag |
37677370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 16742931 - 16742993
Alignment:
| Q |
175 |
tcggacactaacatgtgtttgacatcagaaacgccttatatatgaagtgttagtgctacatag |
237 |
Q |
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| T |
16742931 |
tcggacactaacacgggttggacatcagacacaccttcgatatgaagtgttggtgctacatag |
16742993 |
T |
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