View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_33 (Length: 356)
Name: NF4513_low_33
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 18041934 - 18042094
Alignment:
| Q |
11 |
catcatcacacccttaacttcagaaacttgagccttcactttggcaagcttgttaatctcttcaggatgatcaacacaatattgcatttgctgctttaat |
110 |
Q |
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| T |
18041934 |
catcataacacccttaacttcagaaacttgagccttcactttggcaagcttgttaatctcttcaggatgatcaacacaatattgcatttgctgctttaat |
18042033 |
T |
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| Q |
111 |
ttaggcctatagattttcatgcatagtgcattagtaaattattatttgttgcatagtaaaa |
171 |
Q |
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| T |
18042034 |
ttaggcctatagattttcatgcatagtgcattagtaaattattatttgttgcatagtaaaa |
18042094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 18036810 - 18036970
Alignment:
| Q |
11 |
catcatcacacccttaacttcagaaacttgagccttcactttggcaagcttgttaatctcttcaggatgatcaacacaatattgcatttgctgctttaat |
110 |
Q |
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| T |
18036810 |
catcataacacccttaacttcagaaacttgagccttcactttggcaagcttgttaatctcttcaggatgatcaacacaatattgcatttgctgctttaat |
18036909 |
T |
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| Q |
111 |
ttaggcctatagattttcatgcatagtgcattagtaaattattatttgttgcatagtaaaa |
171 |
Q |
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| T |
18036910 |
ttaggcctatggattttcatgcatagtgcattagtaaatcattatttattgcatagtaaaa |
18036970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 173 - 283
Target Start/End: Original strand, 18037194 - 18037304
Alignment:
| Q |
173 |
ttcgggataatgtctctcgatatatctatcattacccttaaacgattcacaataagtaattagatgaaactagtttaaaataaaactttttatagatact |
272 |
Q |
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| T |
18037194 |
ttcgggatcatgtctctcaatatatctatcattacccttaaacgattcacaacaagtaattagatgaaactaattcaaaataaaactttttatagttact |
18037293 |
T |
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| Q |
273 |
atgtttgcata |
283 |
Q |
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||||||||||| |
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| T |
18037294 |
atgtttgcata |
18037304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 173 - 283
Target Start/End: Original strand, 18042355 - 18042465
Alignment:
| Q |
173 |
ttcgggataatgtctctcgatatatctatcattacccttaaacgattcacaataagtaattagatgaaactagtttaaaataaaactttttatagatact |
272 |
Q |
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|||| ||| |||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18042355 |
ttcgtgatcatgtctctcgctatatctctcattacccttaaacgattcacagcaagtaattagatgaaactagtttaaaataaaactttttatagatact |
18042454 |
T |
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| Q |
273 |
atgtttgcata |
283 |
Q |
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| T |
18042455 |
acgtttgcata |
18042465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 10692667 - 10692581
Alignment:
| Q |
11 |
catcatcacacccttaacttcagaaacttgagccttcactttggcaagcttgttaatctcttcaggatgatcaacacaatattgcat |
97 |
Q |
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| T |
10692667 |
catcatgacacctttaacttcagaaacctgagctttcacctttgcaagcttgcttatctcgtcaggatgatcaacacagtactgcat |
10692581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 7535872 - 7535947
Alignment:
| Q |
27 |
acttcagaaacttgagccttcactttggcaagcttgttaatctcttcaggatgatcaacacaatattgcatttgct |
102 |
Q |
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||||||||||||||||| |||||||| ||||| ||| ||| ||| || ||||| || ||||||||||||||||||| |
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| T |
7535872 |
acttcagaaacttgagctttcactttagcaagtttgctaacctcctccggatgttccacacaatattgcatttgct |
7535947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 21215599 - 21215513
Alignment:
| Q |
26 |
aacttcagaaacttgagccttcactttggcaagcttgttaatctcttcaggatgatcaacacaatattgcatttgctgctttaattt |
112 |
Q |
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||||| |||||| ||||| || ||||| ||||| ||| ||| |||||| ||||| || |||||||||||||| |||| ||| ||||| |
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| T |
21215599 |
aacttgagaaacctgagcttttactttcgcaagtttgctaacctcttctggatgttccacacaatattgcatatgctccttcaattt |
21215513 |
T |
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