View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_34 (Length: 345)
Name: NF4513_low_34
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 2937914 - 2937583
Alignment:
| Q |
1 |
ggagagtaaaatttctttcaaataattgtttatcctc------ttagctcagttggtattggaagagacaatgcataattatgaaaggttggggttcaaa |
94 |
Q |
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| T |
2937914 |
ggagagtaaagtttctttcaaataattgtttgtcctcgtgagcttagctcacttgatattggtagggacaatgcataattatgaaaagttggggttcaaa |
2937815 |
T |
|
| Q |
95 |
ctctgacnnnnnnnnnnnttgtttaaagttttgacttagatatcaatcattttatttaatgggatcttaaatatattaagggnnnnnnnttgaaacttta |
194 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2937814 |
ctctgacaaaaaaaaa--ttgtttaaagttttgacttagatatcaatcattttatttaatgggatcttaaatatattaagggaaaaaaattgaaacttta |
2937717 |
T |
|
| Q |
195 |
aataacttacctcaatgcctttcaaaaaataaataacatacctcgtccaatgaaacacaacattttaatcattatttcctttctttttaaaaatatattt |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2937716 |
aataacttacctcaatgcctttcaaaaaataaataacatacctcgtccaatgaaacacaacattttaatcattatttcctttctttttaaaaatatattt |
2937617 |
T |
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| Q |
295 |
tccctttaatcttattagaatgagtcatgctaac |
328 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
2937616 |
tccctttaatcttattagaatgagtcatgctaac |
2937583 |
T |
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