View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4513_low_36 (Length: 342)

Name: NF4513_low_36
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4513_low_36
NF4513_low_36
[»] chr5 (2 HSPs)
chr5 (242-324)||(43186213-43186297)
chr5 (136-221)||(28673486-28673571)
[»] chr8 (2 HSPs)
chr8 (120-216)||(18314834-18314930)
chr8 (120-217)||(18318840-18318937)
[»] chr4 (4 HSPs)
chr4 (103-194)||(532605-532696)
chr4 (107-222)||(8186543-8186658)
chr4 (100-210)||(1481523-1481633)
chr4 (101-197)||(7225329-7225425)
[»] chr3 (2 HSPs)
chr3 (138-194)||(51113405-51113461)
chr3 (169-222)||(513924-513977)
[»] chr6 (1 HSPs)
chr6 (101-222)||(9411884-9412005)
[»] chr1 (1 HSPs)
chr1 (101-194)||(9581472-9581565)
[»] chr7 (1 HSPs)
chr7 (9-38)||(7977799-7977828)


Alignment Details
Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 43186213 - 43186297
Alignment:
Q  242 taaccactgttgtcgattgcagatcgcggagaagagtggtttgcttgaaattggctatgctacgagcta--tacagctgctattt 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  43186213 taaccactgttgtcgattgcagatcgcggagaagagtggtttgcttgaaattggctatgctacgagctatgtacagctgctattt 43186297  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 28673486 - 28673571
Alignment:
Q  136 aaggttaatctctcttgtcattactacattgacgaccaattgcttttccacttgttcaagaactgtatgtttctcaaagaggttat 221  Q
    |||||||||||||||  |||| |||||||  |||||||||  |||||||| ||| | || ||||||| | ||||| ||||||||||    
T  28673486 aaggttaatctctctcatcatcactacatcaacgaccaatcacttttccatttgataaacaactgtaagcttctcgaagaggttat 28673571  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 216
Target Start/End: Original strand, 18314834 - 18314930
Alignment:
Q  120 actttccaaactccttaaggttaatctctcttgtcattactacattgacgaccaattgcttttccacttgttcaagaactgtatgtttctcaaagag 216  Q
    ||||| ||||||||  ||||||||| || ||  ||||||||||||  |||| |||| |||||||||||||||||||||||||| | ||||| |||||    
T  18314834 acttttcaaactccgaaaggttaatttcgctgatcattactacatcaacgatcaatcgcttttccacttgttcaagaactgtaagcttctcgaagag 18314930  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 18318840 - 18318937
Alignment:
Q  120 actttccaaactccttaaggttaatctctcttgtcattactacattgacgaccaattgcttttccacttgttcaagaactgtatgtttctcaaagagg 217  Q
    ||||||||||||||  |||||| ||||| || ||||| |||| ||   ||| |||| |||| ||||||||||||||||||| | | ||||| ||||||    
T  18318840 actttccaaactccgaaaggttgatctcactggtcatcactatatcaccgatcaatcgcttatccacttgttcaagaactggaagcttctcgaagagg 18318937  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 532696 - 532605
Alignment:
Q  103 gagactctttcatttgtactttccaaactccttaaggttaatctctcttgtcattactacattgacgaccaattgcttttccacttgttcaa 194  Q
    ||||||||||||||   ||||| ||||||||  ||||||||||| |||  |||| |||||||  ||||||||| ||||||||||||||||||    
T  532696 gagactctttcattatcacttttcaaactccgcaaggttaatctttctactcatgactacatcaacgaccaatcgcttttccacttgttcaa 532605  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 222
Target Start/End: Original strand, 8186543 - 8186658
Alignment:
Q  107 ctctttcatttgtactttccaaactccttaaggttaatctctcttgtcattactacattgacgaccaattgcttttccacttgttcaagaactgtatgtt 206  Q
    |||||||||| | ||||| |||||| |  ||||||||||| |||  |||| |||| ||  ||||| |||||||||| |||||||| ||||| |||| |      
T  8186543 ctctttcattggcacttttcaaacttcgcaaggttaatctatctaatcataactatatcaacgacaaattgctttttcacttgttaaagaattgtaagca 8186642  T
Q  207 tctcaaagaggttatc 222  Q
    |||| |||||||||||    
T  8186643 tctcgaagaggttatc 8186658  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 210
Target Start/End: Complemental strand, 1481633 - 1481523
Alignment:
Q  100 ttagagactctttcatttgtactttccaaactccttaaggttaatctctcttgtcattactacattgacgaccaattgcttttccacttgttcaagaact 199  Q
    |||||| |||||||||| | ||| | ||||||||  ||| |||||||||||  |||||||||| |  |||||   |||||||| || |||||||||||||    
T  1481633 ttagaggctctttcattggcactcttcaaactccgcaagcttaatctctctgatcattactacgtcaacgacattttgctttttcaattgttcaagaact 1481534  T
Q  200 gtatgtttctc 210  Q
    | | |||||||    
T  1481533 gcaagtttctc 1481523  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 197
Target Start/End: Original strand, 7225329 - 7225425
Alignment:
Q  101 tagagactctttcatttgtactttccaaactccttaaggttaatctctcttgtcattactacattgacgaccaattgcttttccacttgttcaagaa 197  Q
    ||||| |||||||||  | ||||| |||||||| || ||||||||||||| ||||| | |||||  | ||  ||||||||||||| ||||| |||||    
T  7225329 tagaggctctttcatcagcacttttcaaactccgtagggttaatctctctggtcatgaatacatcaatgatgaattgcttttccatttgtttaagaa 7225425  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 51113405 - 51113461
Alignment:
Q  138 ggttaatctctcttgtcattactacattgacgaccaattgcttttccacttgttcaa 194  Q
    ||||||||||||| |||||||||||||  || |||||||| ||||||||||||||||    
T  51113405 ggttaatctctctagtcattactacatcaactaccaattgtttttccacttgttcaa 51113461  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 513924 - 513977
Alignment:
Q  169 gaccaattgcttttccacttgttcaagaactgtatgtttctcaaagaggttatc 222  Q
    ||||||| |||||||||||||||||| ||||||| | ||||  |||||||||||    
T  513924 gaccaatcgcttttccacttgttcaaaaactgtaagcttcttcaagaggttatc 513977  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 222
Target Start/End: Complemental strand, 9412005 - 9411884
Alignment:
Q  101 tagagactctttcatttgtactttccaaactccttaaggttaatctctcttgtcattactacattgacgaccaattgcttttccacttgttcaagaactg 200  Q
    ||||||||||||||||   ||||| |||||||   ||| ||||||||||| ||||| |||||||  |||||  ||  || ||| ||||||| ||||||||    
T  9412005 tagagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaactg 9411906  T
Q  201 tatgtttctcaaagaggttatc 222  Q
    || | ||||| |||||||||||    
T  9411905 taagcttctccaagaggttatc 9411884  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 194
Target Start/End: Complemental strand, 9581565 - 9581472
Alignment:
Q  101 tagagactctttcatttgtactttccaaactccttaaggttaatctctcttgtcattactacattgacgaccaattgcttttccacttgttcaa 194  Q
    |||||||||||||||| | | |||||| |||||  ||  ||||||||||| ||||| ||||| |  || |||| ||||||||||||||||||||    
T  9581565 tagagactctttcattagcattttccagactccgcaaaattaatctctctcgtcatgactacctcaacaaccatttgcttttccacttgttcaa 9581472  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 38
Target Start/End: Complemental strand, 7977828 - 7977799
Alignment:
Q  9 ttgtttccctttgcttgaagaactcgacct 38  Q
    ||||||||||||||||||||||||||||||    
T  7977828 ttgtttccctttgcttgaagaactcgacct 7977799  T

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