View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_37 (Length: 339)
Name: NF4513_low_37
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 38478082 - 38478384
Alignment:
| Q |
20 |
atccagctcagctaggtaatcttgaggtaagcattattgcgatcttgtggtaagcattattcagaggatagagagtaaatagtcatcttgatcctcaaat |
119 |
Q |
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| T |
38478082 |
atccagctcaactaggtaatcttgaggtaagcattattgcgatcttgtggtaagcattattcagaggatagagagtaaatagtcatcttgatcctcaaat |
38478181 |
T |
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| Q |
120 |
gtgtgaggtagtgtcactatagtgacagcgtgtgaaacattcaaggacctagacggctatttactcatatagcaccacccaaataagttcaagaaaatac |
219 |
Q |
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| T |
38478182 |
gtgtgaggtagtgtcactatagtgacagcgtgtgaaacattcaaggacctagacggctatttactcatatagcaccacccaaataagttcaagaaaatac |
38478281 |
T |
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| Q |
220 |
atctttaatctgcatcccttcagctccactaatgccaacaccaatatcagcctcctcctaagtcctaagcataccaacatcatctgcaccatcaccacta |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38478282 |
atctttaatctgcatcccttcagctccactaatgccaactccaatatcagcctcctcctaagtcctaagcataccaacatcatctgcaccatcaccacta |
38478381 |
T |
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| Q |
320 |
aac |
322 |
Q |
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||| |
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| T |
38478382 |
aac |
38478384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 88
Target Start/End: Original strand, 38467693 - 38467723
Alignment:
| Q |
58 |
gcgatcttgtggtaagcattattcagaggat |
88 |
Q |
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| T |
38467693 |
gcgatcttgtggtaagcattattcagaggat |
38467723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 92 - 275
Target Start/End: Complemental strand, 1279743 - 1279558
Alignment:
| Q |
92 |
gagtaaatagtcatcttgatcctcaaatgtgtgaggtagtgtcactatagtgacagcgtgtgaaacattcaaggacctagacggctatt--tactcatat |
189 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | | ||||| |||||| || |
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| T |
1279743 |
gagtaagtagtcatcttgatcctcaaatgtgtgaggtagtgtcactatagtgacagcatgtgaaacatttaaggacctaaaggactatttatactcaaat |
1279644 |
T |
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| Q |
190 |
agcaccacccaaataagttcaagaaaatacatctttaatctgcatcccttcagctccactaatgccaacaccaatatcagcctcct |
275 |
Q |
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| T |
1279643 |
agaacaatcgaaataaattcaagaaaatatatgtttgacctgcatcccttcagcaccactaattccaactccaatatcagcttcct |
1279558 |
T |
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