View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4513_low_38 (Length: 338)
Name: NF4513_low_38
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_38 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 30746968 - 30747126
Alignment:
| Q |
1 |
tctgggtcattgttattttcacttttttacgttaaagtttatacctttttgtggaatttttgtaacaaaatattgatgttttgtttcattgcagaggcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30746968 |
tctgggtcattgttattttcacttttttacgttaaagtttatacctttttgtggaatttttgtaacaaaatattgatgttttgtttcattgcagaggcag |
30747067 |
T |
|
| Q |
101 |
aggaggttgcaataagaaatatcatagcttgtgggcaaataggagtagcagaatcgtcg |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30747068 |
aggaggttgcaataagaaatatcatagcttgtgggcaaatacgagtagcagaatcgtcg |
30747126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 185 - 316
Target Start/End: Original strand, 30747164 - 30747295
Alignment:
| Q |
185 |
gtataataaagcaaaacaaaaaggaaagaattcatattaagattgttgacaaggtacgatgtaagatgtttgttgcttgaagaattttgtttttctgttg |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30747164 |
gtataataaagcaaaacaaaaaggaaagaattcatattaagattgttgacaaggtacgatgtaagatgtttgttgcttgaagaattttgtttttctgttg |
30747263 |
T |
|
| Q |
285 |
ttttccgtgattgttggaaatttagttctgtg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
30747264 |
ttttccgtgattgttggaaatttagttctgtg |
30747295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University