View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_39 (Length: 331)
Name: NF4513_low_39
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 311
Target Start/End: Original strand, 39291306 - 39291602
Alignment:
| Q |
14 |
agaggataaacgtaatcataacataatccaaaacgtttcaaatctttacgaagttaacaataactgcttggtttgctcgaatacgtttcgtttcttatat |
113 |
Q |
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| T |
39291306 |
agaggataaacgtaatcataacataatccaaa-cgtttcaaatctttgcgaagttaacaataacttcttggtttgctcgaatacgtttcgtttcttatat |
39291404 |
T |
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| Q |
114 |
ttattctgatctaaaaggtcaatttcaaaaatcatttgaaaagtaacatttaggggcaccagttacacacaaatgttttcgagcaagttaggctcatctt |
213 |
Q |
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| T |
39291405 |
ttattctgatctaaaaggtcaatttcaaaaatcatttgaaaagtaacatttaggggcaccagttacacacaaatgttttcgagtgagttaggctcatctt |
39291504 |
T |
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| Q |
214 |
ccttaaagaccaaaaagaaatgattttgttgtcggagctcgaaagtcgttatttcaaatatcaatgtcaagaagttcaaagacataatccagggacat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39291505 |
ccttaaagaccaaaaagaaatgattttgttgtcggagctcgaaagtcgttatttcaaataccaatgtcaagaagttcaaagacataatccagggacat |
39291602 |
T |
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