View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_40 (Length: 329)
Name: NF4513_low_40
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 311
Target Start/End: Original strand, 27668565 - 27668870
Alignment:
| Q |
7 |
gtacaatttctctttacacccttgttgaggcctctgcatacataacattcaagcaccactagtacat----ggtttcttttatatatccaaaattaattt |
102 |
Q |
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| T |
27668565 |
gtacaatttctctttacacccttgttgaggcctctgcatacataacattcaagcaccactagtacatccatggcttcttttatatatccaaaattaattt |
27668664 |
T |
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| Q |
103 |
ctgttatggctaactttcatcgcattcattccaaattgaagtacaatttccttgattccttaaccatgttggcttacattttcttcctcgtagccaattg |
202 |
Q |
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| T |
27668665 |
ctgtcatggctaactttcatcgcattcattccaacttgaagttcaatttccttgatgccttaaccatgttggcttacatttttgtcctcgtagtcaattg |
27668764 |
T |
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| Q |
203 |
ttcttagtcttttgatacccacctttcaactccacactccaaccattttaccttgactcctccaacatgactaacctcaataccgaagcccttgatattt |
302 |
Q |
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| T |
27668765 |
ttcttagtcttttgatacccacctttcaactccacactccaacca-tttaccttgactcctccaacatcactaacctcaataccgaagcccttg--attt |
27668861 |
T |
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| Q |
303 |
aacggccat |
311 |
Q |
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| T |
27668862 |
aacggccat |
27668870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 295
Target Start/End: Original strand, 27673538 - 27673631
Alignment:
| Q |
201 |
tgttcttagtcttttgatacccacctttcaactccacactccaaccattttaccttgactcctccaacatgactaacctcaataccgaagccctt |
295 |
Q |
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| T |
27673538 |
tgttcttagccttttgatacccacctttcaactcaacaccccaagca-tttatcttgactccgtcaacataactaacctcaataccgaagccctt |
27673631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 138 - 298
Target Start/End: Complemental strand, 27668340 - 27668176
Alignment:
| Q |
138 |
ttgaagtacaatttccttgattccttaaccatgttggcttacattttcttcctcgtagccaat-----tgttcttagtcttttgatacccacctttcaac |
232 |
Q |
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||||||| || |||||||| | | ||||||||||||| || ||||||||| ||||||| ||| || |||||| |||||||| | | ||||||||| |
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| T |
27668340 |
ttgaagtgcagtttccttgttgctttaaccatgttggtttccattttctttctcgtagacaacgtaaatggtcttagccttttgatcctcgcctttcaac |
27668241 |
T |
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| Q |
233 |
tccacactccaaccattttaccttgactcctccaacatgactaacctcaataccgaagcccttgat |
298 |
Q |
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| T |
27668240 |
tccacacccaaatcattt-atcttgactccgtcaacatcactaacctcaatactgaagccgttgat |
27668176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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