View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_44 (Length: 317)
Name: NF4513_low_44
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 148 - 304
Target Start/End: Original strand, 37576304 - 37576462
Alignment:
| Q |
148 |
agttttcatgactttttgttatcttatatctcaggcatatatttcatacacata--ctttttattagccaaaaatatttcaagcttgcgagatgtggttc |
245 |
Q |
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| T |
37576304 |
agttttcatgactttttgttatcttatatctcaggcatatagtacatacacatatactttttattagccaaaaatatttcaagcttgcgagatatggttc |
37576403 |
T |
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| Q |
246 |
aaactttaaaacttgtaatcttttttactgaaaagcgttaccaaaaatggttctgtgct |
304 |
Q |
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| T |
37576404 |
aaagtttaaaacttgtaatcttttttactgaaaagcgttaccaaaaatggttctgtgct |
37576462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 37575362 - 37575486
Alignment:
| Q |
18 |
agatataacaatgttttatataaaaactgccaaattttgtccttcactttgatgttaggaacctttaaaattgtgtttttgtttggatgaaatttaaact |
117 |
Q |
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| T |
37575362 |
agatataacaatgttttatttaaaaactgccaaattttgtccttcaatttgatgttaggaaactttaaaattgtg-ttttgtttggatgaaatttaaact |
37575460 |
T |
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| Q |
118 |
tcagaaaataaactcactactgaatg |
143 |
Q |
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| T |
37575461 |
tcagaaaataaactcactaccgaatg |
37575486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 8213113 - 8213236
Alignment:
| Q |
80 |
ctttaaaattgtgtttttgtttggatgaaatttaaacttcagaaaataaactcactactgaatgagtta---gttttcatgactttttgttatcttatat |
176 |
Q |
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| T |
8213113 |
ctttataattatgtttttgtttggatgaattttaaacttaagaaaataaactcgttacttaacgagttaatgattttcatgactttttgttatcctgtat |
8213212 |
T |
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| Q |
177 |
ctcaggcatatatttcatacacat |
200 |
Q |
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| T |
8213213 |
cacaagaatatagtgcatacacat |
8213236 |
T |
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