View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_49 (Length: 289)
Name: NF4513_low_49
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 18042515 - 18042772
Alignment:
| Q |
11 |
aatgaggtacccatattctttgttgaggctacgagctgaagcagttgcagctttgccaccaccatattttttgctgaattcttccttcacacgctcaaga |
110 |
Q |
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| T |
18042515 |
aatgaggtacccatattctttgttgaggctacgagctgaagcagttgcagctttgccaccaccatattttttgctgaattcttccttaacacgctcaaga |
18042614 |
T |
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| Q |
111 |
aaagcaataggaatttgtctaccagcagattcaaccgccacgacgcagtaagctacaaaatccagaacaaagaaaaaacttatgccaaatttcatacact |
210 |
Q |
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| T |
18042615 |
aaagcaataggaatttgtctaccagcagattcaaccgccacgacgcagtaagctacaaaatccagaac---gaataaacttatgccaaatttcatccact |
18042711 |
T |
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| Q |
211 |
ttctcagttaaattttcaaaatcgttaattatcgcttaaataaagatcgataatctcattct |
272 |
Q |
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| T |
18042712 |
ttctcagttaaattttcaaaatcgttaattatcg-ttaaataaagatcgataatctcattct |
18042772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 18037354 - 18037562
Alignment:
| Q |
11 |
aatgaggtacccatattctttgttgaggctacgagctgaagcagttgcagctttgccaccaccatattttttgctgaattcttccttcacacgctcaaga |
110 |
Q |
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| T |
18037354 |
aatgaggtacccatattctttgttgaggctacgagctgaagcagttgcagcttcgccaccaccatattttttgctgaattcttccttcacacgctcaaga |
18037453 |
T |
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| Q |
111 |
aaagcaataggaatttgtctaccagcagattcaaccgccacgacgcagtaagctacaaaatccagaacaaagaaaaaacttatgccaaatttcatacact |
210 |
Q |
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| T |
18037454 |
aaagcaataggaatttgtctaccagcagattcaactgccaccacgcagtaggctacaaaatccagaacaacgaaaaaacttatgccaaatttcataaact |
18037553 |
T |
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| Q |
211 |
ttctcagtt |
219 |
Q |
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| T |
18037554 |
ttctcagtt |
18037562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 18037692 - 18037756
Alignment:
| Q |
208 |
actttctcagttaaattttcaaaatcgttaattatcgcttaaataaagatcgataatctcattct |
272 |
Q |
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||||||||||||||||||||||||| | |||||||| |||||||||||||||| ||||||||||| |
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| T |
18037692 |
actttctcagttaaattttcaaaattggtaattatctcttaaataaagatcgacaatctcattct |
18037756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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