View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_5 (Length: 643)
Name: NF4513_low_5
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 9 - 384
Target Start/End: Complemental strand, 32741536 - 32741148
Alignment:
| Q |
9 |
gacatcatcaaggaaatggattatacttttgatgaagggttagtaaaactatggtggaaacatgagagtggttcattggatgaagacctcaagccattca |
108 |
Q |
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| T |
32741536 |
gacatcatgaaggaaatggatgatacttttgatgaatagttagtaaagctatggtggaaacatgagagtggttcattggatgaagacctcaagccattca |
32741437 |
T |
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| Q |
109 |
ggaatgatattgatgcaactgcaatgtctgattatgctcgtgataacaagtgcgatgttgaa------------cctaaggtgaatt-aggaaatgctat |
195 |
Q |
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| T |
32741436 |
ggaatgatactgatgcaactgcaatgtctgattatgctcgtgataacaagtgcgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctat |
32741337 |
T |
|
| Q |
196 |
aaatgttgttgatgttattggggaacaaaagggaaagggtgtagtggcggatgaaattgaaggcaatgttggtgaagcagacaatgatgatggagatgtt |
295 |
Q |
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| T |
32741336 |
aattgttgctgatgttattggggaacaaaagggaaagggtgtagtggcggatgaaattgaaggcgatgttggtgaagtagacatcgatggtggagatgtt |
32741237 |
T |
|
| Q |
296 |
agtagtgatgatggtgattcaattataggcacacgcttttatgatagtgaagaagagaggatggctgcggttgatgatgggtttgataa |
384 |
Q |
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| T |
32741236 |
agtagtgatgatggtgatttaattaaaggcacacgctttgatgatagtgaagaagagaagatggctgcggttgatgatgggtttgataa |
32741148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 475 - 626
Target Start/End: Complemental strand, 32733862 - 32733717
Alignment:
| Q |
475 |
cttcaaacctacttgagcaacacgaggacacacaaaacccctaaaacccacgcatagaaatagaaagaagaaaaannnnnnnnnnnnnnnnngcaaacgc |
574 |
Q |
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| T |
32733862 |
cttcaaacttacttgagcaacacgagtacacacaaaacccttaaaacccacgcatagaaatagaaagaagaaaaa------acacacacacagcaaacgc |
32733769 |
T |
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| Q |
575 |
aactcttcttcaacctataggcattcttcaccctaggcaacaacacactttt |
626 |
Q |
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| T |
32733768 |
aactcttcttcaacctataggcattcttcaccctaggcaacaacacactttt |
32733717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 381 - 443
Target Start/End: Complemental strand, 32733922 - 32733861
Alignment:
| Q |
381 |
ataaaaatttcacacaaacgcaacggtagaaatgggccgggtaaaaagcggagtaactttact |
443 |
Q |
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| T |
32733922 |
ataaaaatttcacacaaacgcaacggtagaaatggg-cgggtaaaaagctcagtaactttact |
32733861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 367
Target Start/End: Complemental strand, 12206329 - 12205970
Alignment:
| Q |
9 |
gacatcatcaaggaaatggattatacttttgatgaagggttagtaaaactatggtggaaacatgagagtggttcattggatgaagacctcaagccattca |
108 |
Q |
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|||||||| |||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
12206329 |
gacatcatgaaggaaattgatgatacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagacgtcaagccaatca |
12206230 |
T |
|
| Q |
109 |
ggaatgatattgatgcaactgcaatgtctgattatgctcgtgataacaagtgcgatgttgaacctaaggtgaatt-aggaaatgctataaatgttgttga |
207 |
Q |
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| T |
12206229 |
ggaatgatactgatgcaaccttaatgtctgattatgctcgtgataagaactgtgatgttgaacctaaggtgaatttaggaaatgctataaatgttgctga |
12206130 |
T |
|
| Q |
208 |
tgttattggggaacaaaagggaaagggtgtagtggcggatgaaattgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtagtgatgat |
307 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
12206129 |
tgttatcggggaacgaaagggaaagggtgtagtggcggattaagttgaaggcaatgttggtgaagcagacagtgatgatgaagatgttagtagtgatgat |
12206030 |
T |
|
| Q |
308 |
ggtgattcaattataggcacacgcttttatgatagtgaagaagagaggatggctgcggtt |
367 |
Q |
| |
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||||||||||||| |||| ||| |||| ||||||||||||||||||||||||||| |||| |
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| T |
12206029 |
ggtgattcaattaaaggcgcacactttaatgatagtgaagaagagaggatggctggggtt |
12205970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 382
Target Start/End: Complemental strand, 11119832 - 11119446
Alignment:
| Q |
9 |
gacatcatcaaggaaatggattatacttttgatgaagggttagtaaaactatggtggaaacatgagagtggttcattggatgaagacctcaagccattca |
108 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119832 |
gacatcatgaaggaaatggatgatacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagacctcaagccattca |
11119733 |
T |
|
| Q |
109 |
ggaatgatattgatgcaactgcaatgtctgattatgctcgtgataacaagtgcgatgttgaa------------cctaaggtgaatt-aggaaatgctat |
195 |
Q |
| |
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| ||||||| ||||||||||||||||||| |||||||||||||||| ||||| ||||||||| ||||||||||||| |||||||| ||| |
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| T |
11119732 |
gtaatgatactgatgcaactgcaatgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatggtat |
11119633 |
T |
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| Q |
196 |
aaatgttgttgatgttattggggaacaaaagggaaagggtgtagtggcggatgaaattgaaggcaatgttggtgaagcagacaatgatgatggagatgtt |
295 |
Q |
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|||||||| |||| |||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11119632 |
aaatgttgctgattttatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaacgatgatggagatgtt |
11119533 |
T |
|
| Q |
296 |
agtagtgatgatggtgattcaattataggcacacgcttttatgatagtgaagaagagaggatggctgcggttgatgatgggtttgat |
382 |
Q |
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||||||||||||||||||||||| | |||||||| |||| |||| |||||||||||||||||||||| |||||||||| |||||||| |
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| T |
11119532 |
agtagtgatgatggtgattcaatcaaaggcacacactttaatgacagtgaagaagagaggatggctggggttgatgataggtttgat |
11119446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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