View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_50 (Length: 289)
Name: NF4513_low_50
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 53138592 - 53138858
Alignment:
| Q |
18 |
aaagcaatggcatgcaatgaagatgctttggttattttcacctgcgaattgccaaaaacatatttagttatattttcagcaacacatcgtcgtgtttcga |
117 |
Q |
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| T |
53138592 |
aaagcaatggcatgcaatgaagatgctttggttattttcacctgcgaattaccaaaaacatatttagttatattttcagcaacacgtcgtcgtgtttcga |
53138691 |
T |
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| Q |
118 |
ttaattgaagtgaaagacnnnnnnngtactaaaagccaagctgtagtagaaacaggtgtcaataataatagcggagttgcttctccactaacatgtaatg |
217 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53138692 |
ttaattgaagtgaaagacaaaaaaagtactaaaagccaagctgtagtagaaacaggtgtcaataataatagcggagttgcttctccactaacatgtaatg |
53138791 |
T |
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| Q |
218 |
taatgtattatt---gttgttgatgatgta-----cctcgtacatgcatcgttctctctttttgcct |
276 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
53138792 |
taatgtattattattgttgttgatgatgtatacctcctcgtacatgcatcgttctctctttttgcct |
53138858 |
T |
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