View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4513_low_53 (Length: 278)

Name: NF4513_low_53
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4513_low_53
NF4513_low_53
[»] chr1 (2 HSPs)
chr1 (20-268)||(44306103-44306350)
chr1 (47-217)||(22893803-22893974)
[»] chr2 (2 HSPs)
chr2 (20-268)||(6049886-6050126)
chr2 (47-259)||(26661509-26661720)
[»] chr4 (1 HSPs)
chr4 (62-268)||(13893606-13893812)
[»] scaffold0586 (1 HSPs)
scaffold0586 (48-217)||(9594-9760)
[»] chr8 (2 HSPs)
chr8 (47-217)||(32717779-32717946)
chr8 (47-217)||(10637648-10637815)
[»] chr6 (2 HSPs)
chr6 (48-217)||(19701161-19701332)
chr6 (47-259)||(21481427-21481638)
[»] chr7 (3 HSPs)
chr7 (34-240)||(33430156-33430367)
chr7 (45-171)||(13331531-13331656)
chr7 (45-171)||(13342446-13342571)
[»] chr5 (1 HSPs)
chr5 (45-171)||(5672002-5672127)
[»] chr3 (1 HSPs)
chr3 (65-171)||(15761973-15762079)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 44306103 - 44306350
Alignment:
Q  20 attccaccttccctgatcttctataataacccatcatctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggta 119  Q
    |||||||||||  | ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44306103 attccaccttcttttatcttctataaaaacccatcatctttgtggtgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggta 44306202  T
Q  120 ccatcaaatttcttttcaattcttccattactcaacatagatttggtgattgatatcattatctcattattttttggtctactgttgttgcttattgcct 219  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44306203 ccatcaaatt-cttttcaattcttccattactcaacatagatttggtcattgatatcattatctcattattttttggtgtactgttgttgcttattgcct 44306301  T
Q  220 tctctcaactcatttttgttcctgttttgagaaatttaacccacctttg 268  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44306302 tctctcaactcatttttgttccttttttgagaaatttaacccacctttg 44306350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 22893803 - 22893974
Alignment:
Q  47 aacccatcatctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttcca 146  Q
    ||||||| |||||||| |||||||||||||||||| | |||  ||| |||||||||||||||||||||||||| |||| |||||| ||| ||||||||||    
T  22893803 aacccatgatctttgtagtgttcatcaactgcttgctgtttgagttttggatttcactcttctcttcaaggtaacatctaatttcattttaattcttcca 22893902  T
Q  147 ttactcaacatagatttggtgattgatatca-ttatctcattattttttggtctactgttgttgcttattgc 217  Q
    |||||||||||||||||||||||| |||||| || |||  || |||||| |||| ||| |||||||||||||    
T  22893903 ttactcaacatagatttggtgatttatatcatttctctgtttttttttttgtcttctgatgttgcttattgc 22893974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 6049886 - 6050126
Alignment:
Q  20 attccaccttccctgatcttctataataacccatcatctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggta 119  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6049886 attccaccttccctgatcttctataaaaacccatcatctttgtggtgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggta 6049985  T
Q  120 ccatcaaatttcttttcaattcttccattactcaacatagatttggtgattgatatcattatctcattattttttggtctactgttgttgcttattgcct 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  6049986 ccatcaaatttcttttcaattcttccattactcaacatagatttggtgattgata--------tcattattttttggtctactgttgttgcttattgcct 6050077  T
Q  220 tctctcaactcatttttgttcctgttttgagaaatttaacccacctttg 268  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6050078 tctctcaactcatttgtgttcctgttttgagaaatttaacccacctttg 6050126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 47 - 259
Target Start/End: Original strand, 26661509 - 26661720
Alignment:
Q  47 aacccatcatctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttcca 146  Q
    ||||||| ||||||||| ||| |||||||||||||  | || |||| | |||||||||||||| ||||||||| |||| |||||| |   ||||||||||    
T  26661509 aacccatgatctttgtg-tgtgcatcaactgcttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttcca 26661607  T
Q  147 ttactcaacatagatttggtgattgatatcattatctcattattttttggtctactg-ttgttgcttattgccttctctcaactcatttttgttcctgtt 245  Q
    ||||||||||||||||||||||||||||||| | ||||  | |||||| |||| ||| |||||||||||||| || ||||||| ||||||||||| | ||    
T  26661608 ttactcaacatagatttggtgattgatatcaat-tctc--tgtttttttgtctgctgtttgttgcttattgctttgtctcaacccatttttgttcatttt 26661704  T
Q  246 t--tgagaaatttaac 259  Q
    |  |||||||||||||    
T  26661705 ttatgagaaatttaac 26661720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 62 - 268
Target Start/End: Complemental strand, 13893812 - 13893606
Alignment:
Q  62 tggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagat 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13893812 tggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagat 13893713  T
Q  162 ttggtgattgatatcattatctcattattttttggtctactgttgttgcttattgccttctctcaactcatttttgttcctgttttgagaaatttaaccc 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13893712 ttggtgattgatatcattatctcattattttttggtctactgttgttgcttattgccttctatcaactcatttttgttcctgttttgagaaatttaaccc 13893613  T
Q  262 acctttg 268  Q
    |||||||    
T  13893612 acctttg 13893606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 48 - 217
Target Start/End: Original strand, 9594 - 9760
Alignment:
Q  48 acccatcatctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccat 147  Q
    |||||| |||||||| |||||||||||||||||||| |||  ||| ||||||||||||||||||||||||||||||| |||||| ||| |||||||||||    
T  9594 acccatgatctttgtagtgttcatcaactgcttgttgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccat 9693  T
Q  148 tactcaacatagatttggtgattgatatcattatctcattattttttggtctactgttgttgcttattgc 217  Q
    ||||||||||||||||||||||| |||||||| ||||  | |||||| |||| ||| |||||||||||||    
T  9694 tactcaacatagatttggtgatttatatcatt-tctc--tgtttttttgtcttctgatgttgcttattgc 9760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 47 - 217
Target Start/End: Complemental strand, 32717946 - 32717779
Alignment:
Q  47 aacccatcatctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttcca 146  Q
    ||||||| |||||||| |||||||||||||||||| | |||  ||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||||||    
T  32717946 aacccattatctttgtagtgttcatcaactgcttgctgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttcca 32717847  T
Q  147 ttactcaacatagatttggtgattgatatcattatctcattattttttggtctactgttgttgcttattgc 217  Q
    |||||||||||||||||||||||| |||||||| ||||  | |||||| |||| ||| |||||||||||||    
T  32717846 ttactcaacatagatttggtgatttatatcatt-tctc--tgtttttttgtcttctgatgttgcttattgc 32717779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 10637648 - 10637815
Alignment:
Q  47 aacccatcatctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttcca 146  Q
    ||||||| |||||||| |||||||||||||||||| | |||  ||| |||||||||||||||||||||||||| |||| |||||| ||| ||||||||||    
T  10637648 aacccattatctttgtagtgttcatcaactgcttgctgtttgagttttggatttcactcttctcttcaaggtatcatctaatttcattttaattcttcca 10637747  T
Q  147 ttactcaacatagatttggtgattgatatcattatctcattattttttggtctactgttgttgcttattgc 217  Q
    |||||||||||||||||||||||| |||||||| ||||  | |||||| |||| ||| |||||||||||||    
T  10637748 ttactcaacatagatttggtgatttatatcatt-tctc--tgtttttttgtcttctgatgttgcttattgc 10637815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 48 - 217
Target Start/End: Original strand, 19701161 - 19701332
Alignment:
Q  48 acccatcatctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccat 147  Q
    |||||| |||||||| |||||||||||||||||| |||||  ||| ||||||||||| ||||||||||||||||||| |||||| ||| |||||||||||    
T  19701161 acccatgatctttgtagtgttcatcaactgcttgctatttgagttttggatttcacttttctcttcaaggtaccatctaatttcattttaattcttccat 19701260  T
Q  148 tactcaacatagatttggtgattgatatcatta-tctcattattttttg-gtctactgttgttgcttattgc 217  Q
    ||||||||||||||||| ||||| ||||||||  ||| ||| ||||||  |||| ||| |||||||||||||    
T  19701261 tactcaacatagatttgttgatttatatcatttctctgatttttttttttgtcttctgatgttgcttattgc 19701332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 47 - 259
Target Start/End: Original strand, 21481427 - 21481638
Alignment:
Q  47 aacccatcatctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttcca 146  Q
    ||||||| ||||||||| ||| |||||||| ||||  | || |||| | |||||||||||||| ||||||||| |||| |||||| |   ||||||||||    
T  21481427 aacccatgatctttgtg-tgtgcatcaactacttgccaattgggtttttgatttcactcttctattcaaggtaacatctaatttcatcataattcttcca 21481525  T
Q  147 ttactcaacatagatttggtgattgatatcattatctcattattttttggtctactg-ttgttgcttattgccttctctcaactcatttttgttcctgtt 245  Q
    ||||||||||||||||||||||||||||||| | ||||  | |||||| |||| ||| |||||||||||||| || ||||||| ||||||||||| | ||    
T  21481526 ttactcaacatagatttggtgattgatatcaat-tctc--tgtttttttgtctgctgtttgttgcttattgctttgtctcaacccatttttgttcatttt 21481622  T
Q  246 t--tgagaaatttaac 259  Q
    |  |||||||||||||    
T  21481623 ttatgagaaatttaac 21481638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 34 - 240
Target Start/End: Complemental strand, 33430367 - 33430156
Alignment:
Q  34 gatcttctataataacccatcatctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttctt 133  Q
    |||||||||| | ||||||  ||||||| |||||||||||| || ||| ||||| | || || |||||||| ||||||||||||||||||| ||||| ||    
T  33430367 gatcttctattaaaacccacgatctttgaggtgttcatcaagtgtttgctatttggattttgaatttcactattctcttcaaggtaccatctaatttttt 33430268  T
Q  134 ttcaattc-ttccattactcaacatagatttggtgattgatatcattatctcattattttttg----gtctactgttgttgcttattgccttctctcaac 228  Q
    ||  | || |||||||||||||| |||||||| ||||||| |||||| ||||||| ||||||     ||||| |||||||||||||||||||||||||||    
T  33430267 ttttaatcgttccattactcaacgtagatttgatgattgacatcattctctcattgttttttttattgtctattgttgttgcttattgccttctctcaac 33430168  T
Q  229 tcatttttgttc 240  Q
     |||||||||||    
T  33430167 ccatttttgttc 33430156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 171
Target Start/End: Complemental strand, 13331656 - 13331531
Alignment:
Q  45 ataacccatcatctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttc 144  Q
    ||||||||| ||||||||| ||||||||||||||||| |  ||  ||| | ||||||||||||||||||||||||||||| |||||  | ||||||||||    
T  13331656 ataacccatgatctttgtg-tgttcatcaactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttc 13331558  T
Q  145 cattactcaacatagatttggtgattg 171  Q
    |||||||||||||||||||||||||||    
T  13331557 cattactcaacatagatttggtgattg 13331531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 171
Target Start/End: Complemental strand, 13342571 - 13342446
Alignment:
Q  45 ataacccatcatctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttc 144  Q
    ||||||||| ||||||||| ||||||||||||||||| |  ||  ||| | ||||||||||||||||||||||||||||| |||||  | ||||||||||    
T  13342571 ataacccatgatctttgtg-tgttcatcaactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttc 13342473  T
Q  145 cattactcaacatagatttggtgattg 171  Q
    |||||||||||||||||||||||||||    
T  13342472 cattactcaacatagatttggtgattg 13342446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 171
Target Start/End: Complemental strand, 5672127 - 5672002
Alignment:
Q  45 ataacccatcatctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttc 144  Q
    ||||||||| ||||||||| ||||||||||||||||| |  ||  ||| | ||||||||||||||||||||||||||||| |||||  | ||||||||||    
T  5672127 ataacccatgatctttgtg-tgttcatcaactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttc 5672029  T
Q  145 cattactcaacatagatttggtgattg 171  Q
    |||||||||||||||||||||||||||    
T  5672028 cattactcaacatagatttggtgattg 5672002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 171
Target Start/End: Complemental strand, 15762079 - 15761973
Alignment:
Q  65 tgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttg 164  Q
    ||||||||||||  ||| || ||||| | | ||||||||| |||| ||||| |||||||| |||||| | |||||||||| |||||||||||||||||||    
T  15762079 tgttcatcaactatttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttctattactcaacatagatttg 15761980  T
Q  165 gtgattg 171  Q
    |||||||    
T  15761979 gtgattg 15761973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University